PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102080.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 295aa    MW: 33720.5 Da    PI: 10.0324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-14171011399
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfrk 99 
                      +  ++pk+f+e++g  k+ s  + l+ ++g +W+v l  rk  ++  +l+kGW +F +   L+ g  ++F+l  gr++ ++ v++f+ 
  Cucsa.102080.1  17 GNKKMIPKTFVEDYG--KALSNWVNLKLSDGLEWKVGL--RKATNGaLWLEKGWDKFSEHYCLEFGSLLIFTLLnGRRSSNFEVTIFDP 101
                     45679*********9..569999***************..6666666*************************7636688889**99986 PP
2B350.53.8e-16192286199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+ v+ +++v  + ++ +p++fa ++ ++k +s  l++ +   ++W+v +  +k+ ++ + +++GW  F ++ngL++gD+++F++++++   l+v
  Cucsa.102080.1 192 FKVVMRRNNVQGRFNMNIPRRFAGAYFSPKMQSASLQVGN---KKWDVSI--KKYACShVRFAAGWGTFHSENGLEDGDTCLFEMVNTKLCVLKV 281
                     66788889999999************99999987777555...*******..999999788***********************99887777899 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++frk
  Cucsa.102080.1 282 SIFRK 286
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.1965102IPR003340B3 DNA binding domain
SMARTSM010191.3E-66102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-167102IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-1114100No hitNo description
PfamPF023621.3E-1016100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1518103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-21184286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-17186285IPR015300DNA-binding pseudobarrel domain
CDDcd100175.98E-17190285No hitNo description
SMARTSM010192.7E-9192287IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506192287IPR003340B3 DNA binding domain
PfamPF023622.8E-13192286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTCYDFYHFF LPPINRGNKK MIPKTFVEDY GKALSNWVNL KLSDGLEWKV GLRKATNGAL  60
WLEKGWDKFS EHYCLEFGSL LIFTLLNGRR SSNFEVTIFD PTGVETKYVS SSPQLKEDSD  120
TNADSVFKKC YNTPQQLHAE EECNNVSRET PSCKKRVVPK HEVKASRKKQ QSPRKVETTQ  180
RFSSKSDHKP SFKVVMRRNN VQGRFNMNIP RRFAGAYFSP KMQSASLQVG NKKWDVSIKK  240
YACSHVRFAA GWGTFHSENG LEDGDTCLFE MVNTKLCVLK VSIFRKVSTS VSMD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-111LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-111LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657839.11e-126PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0A0KJE01e-123A0A0A0KJE0_CUCSA; Uncharacterized protein
STRINGXP_004160515.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-26B3 family protein