PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102070.1
Common NameCsa_6G489970, LOC105435899
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 148aa    MW: 16973.3 Da    PI: 9.657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-131811799
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                    ++p+ f++++g+    s  ++l+ ++gr+W++ l  + ++++ ++l+kGW +F +   L+ g  +vFkl ++  + +++v +f++
  Cucsa.102070.1  1 MIPRMFIKSYGKL--LSSSVILKLPDGREWKIGL--TTSDNGaVWLEKGWDKFSEHYCLEYGFLLVFKLLNSrGTSSFKVNIFNT 81
                    69********844..7779***************..5555555*************************77554777789999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.004182IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522182IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-15181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-12180No hitNo description
PfamPF023627.2E-10180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-15281IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MIPRMFIKSY GKLLSSSVIL KLPDGREWKI GLTTSDNGAV WLEKGWDKFS EHYCLEYGFL  60
LVFKLLNSRG TSSFKVNIFN TTAMETEYSW NVKDFTKEFD SDSDGSESFC PHSKKRNKAS  120
VPRRRLSKKT RKEDHFSIKT EPEEGGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657840.11e-100PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0A0KL648e-99A0A0A0KL64_CUCSA; Uncharacterized protein
STRINGXP_004142021.12e-93(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-16B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]