PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.102060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 364aa MW: 42178.6 Da PI: 9.8104 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.3 | 7.4e-15 | 1 | 77 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++pkkf++++g+ s + l++++g +W+v+ + ++++ ++l++GW+eF + gLk+g +vF+ldg+s+f + +f+ Cucsa.102060.1 1 MIPKKFITDYGKF--LSNPICLKTPDGLEWKVES--TTTPNGtVWLQNGWQEFSNHYGLKSGSLLVFRLDGNSTF--HTLIFN 77 69********844..6778***************..66665559***************************9999..877776 PP | |||||||
2 | B3 | 47.8 | 2.7e-15 | 147 | 222 | 15 | 90 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 lpk fa++h ++e + ++ +e+++g W + ++++++++ ++++GWk F+k+n+Lkeg ++ F+l+++ f Cucsa.102060.1 147 KRLLPKYFARRHL-NEEFG-KIEIENSDGMGWPMIYKWSQSRKVgfAYISSGWKAFAKENHLKEGHILSFQLIKKGHF 222 3579********5.44454.8***************99544444559************************9986555 PP | |||||||
3 | B3 | 44.5 | 2.8e-14 | 272 | 356 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 k+ l +p +fa +h +++ t +l+ ++W+vkl + + + + +++GW eF k+n+Lk gD+++Fkl ++ s ++vk+f+k Cucsa.102060.1 272 KNPFLNIPLTFAHNHLSSTMH--TAKLMV-GKKQWNVKL--KHYERCIRFSGGWAEFFKQNDLKPGDSCLFKLLtKNeSYCVFKVKIFSK 356 445579******888555444..455444.66*******..77777789***********************663544444556666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-19 | 1 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.6E-12 | 1 | 77 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.40E-12 | 1 | 77 | No hit | No description |
SMART | SM01019 | 4.5E-6 | 1 | 79 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.96 | 1 | 79 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-18 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-15 | 122 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.55E-14 | 126 | 226 | No hit | No description |
SMART | SM01019 | 7.2E-7 | 126 | 230 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-16 | 146 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.6E-14 | 147 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.984 | 150 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.209 | 261 | 357 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-10 | 263 | 357 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-18 | 271 | 357 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-15 | 271 | 357 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-11 | 273 | 356 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.28E-13 | 275 | 355 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MIPKKFITDY GKFLSNPICL KTPDGLEWKV ESTTTPNGTV WLQNGWQEFS NHYGLKSGSL 60 LVFRLDGNST FHTLIFNQNC SEIQYSSNYI GHVESNQVLL HDFFLEEYTT RPQTEETEAK 120 PEKIGFKIVV KKSYIEGRYN MVCMFNKRLL PKYFARRHLN EEFGKIEIEN SDGMGWPMIY 180 KWSQSRKVGF AYISSGWKAF AKENHLKEGH ILSFQLIKKG HFLFTLEGII SPPSPILANN 240 KNVESTTPNY DHFFKVNIHM KSYKNCVLVS KKNPFLNIPL TFAHNHLSST MHTAKLMVGK 300 KQWNVKLKHY ERCIRFSGGW AEFFKQNDLK PGDSCLFKLL TKNESYCVFK VKIFSKNLNL 360 SDQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-167 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-167 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A0KFK0 | 0.0 | A0A0A0KFK0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142021.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 2e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.102060.1 |