PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 364aa    MW: 42178.6 Da    PI: 9.8104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.4e-151771798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    ++pkkf++++g+    s  + l++++g +W+v+   + ++++ ++l++GW+eF +  gLk+g  +vF+ldg+s+f  +  +f+
  Cucsa.102060.1  1 MIPKKFITDYGKF--LSNPICLKTPDGLEWKVES--TTTPNGtVWLQNGWQEFSNHYGLKSGSLLVFRLDGNSTF--HTLIFN 77
                    69********844..6778***************..66665559***************************9999..877776 PP

2B347.82.7e-151472221590
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        lpk fa++h  ++e + ++ +e+++g  W + ++++++++    ++++GWk F+k+n+Lkeg ++ F+l+++  f
  Cucsa.102060.1 147 KRLLPKYFARRHL-NEEFG-KIEIENSDGMGWPMIYKWSQSRKVgfAYISSGWKAFAKENHLKEGHILSFQLIKKGHF 222
                     3579********5.44454.8***************99544444559************************9986555 PP

3B344.52.8e-142723561299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 
                     k+  l +p +fa +h +++    t +l+    ++W+vkl  + + + + +++GW eF k+n+Lk gD+++Fkl  ++ s   ++vk+f+k
  Cucsa.102060.1 272 KNPFLNIPLTFAHNHLSSTMH--TAKLMV-GKKQWNVKL--KHYERCIRFSGGWAEFFKQNDLKPGDSCLFKLLtKNeSYCVFKVKIFSK 356
                     445579******888555444..455444.66*******..77777789***********************663544444556666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-19186IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-12177IPR003340B3 DNA binding domain
CDDcd100174.40E-12177No hitNo description
SMARTSM010194.5E-6179IPR003340B3 DNA binding domain
PROSITE profilePS5086314.96179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-18280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-15122224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-14126226No hitNo description
SMARTSM010197.2E-7126230IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-16146225IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-14147222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984150230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209261357IPR003340B3 DNA binding domain
SMARTSM010195.1E-10263357IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-18271357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-15271357IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-11273356IPR003340B3 DNA binding domain
CDDcd100176.28E-13275355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MIPKKFITDY GKFLSNPICL KTPDGLEWKV ESTTTPNGTV WLQNGWQEFS NHYGLKSGSL  60
LVFRLDGNST FHTLIFNQNC SEIQYSSNYI GHVESNQVLL HDFFLEEYTT RPQTEETEAK  120
PEKIGFKIVV KKSYIEGRYN MVCMFNKRLL PKYFARRHLN EEFGKIEIEN SDGMGWPMIY  180
KWSQSRKVGF AYISSGWKAF AKENHLKEGH ILSFQLIKKG HFLFTLEGII SPPSPILANN  240
KNVESTTPNY DHFFKVNIHM KSYKNCVLVS KKNPFLNIPL TFAHNHLSST MHTAKLMVGK  300
KQWNVKLKHY ERCIRFSGGW AEFFKQNDLK PGDSCLFKLL TKNESYCVFK VKIFSKNLNL  360
SDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-167LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-167LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A0KFK00.0A0A0A0KFK0_CUCSA; Uncharacterized protein
STRINGXP_004142021.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-21B3 family protein