PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.102050.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 1023aa MW: 115950 Da PI: 5.0264 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 15 | 105 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv++p + + + +++p f+++ +g + + t++d +g+sW ++l +k ++ ++++GWk Fv+ + Lk gDf+vF+++g+ f vk Cucsa.102050.2 15 FFKVFLPGSCTLH--MSIPPAFMKHLNGT--FPEKATMQDHTGNSWCITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYHGHCLF--DVK 101 7777755555544..8*******666666..6778***************..9**999**************************997777..888 PP EE-S CS B3 96 vfrk 99 +f k Cucsa.102050.2 102 IFGK 105 8876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-23 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 12 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.619 | 13 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-16 | 15 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.48E-18 | 15 | 103 | No hit | No description |
Pfam | PF02362 | 1.5E-13 | 15 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF09331 | 1.3E-29 | 700 | 832 | IPR015410 | Domain of unknown function DUF1985 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1023 aa Download sequence Send to blast |
MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL 60 EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI 120 PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK 180 VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF 240 FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW 300 EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ 360 SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN 420 VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL 480 SGNSYDDIEE NNMDTAELGV NSCDDIEENN VDSTEHCGNL CDNIKDNNVD TTELGGNSFD 540 IEECNIKQEK QSPASVEPSR KKKKRKSASF EVQEQKEETS EIDTDQDSRR GVETRQRKKI 600 AEQSKGEDGK RKKRGKRGKK SGISGTSSEH DDEEYPLLLP RSSWATTQRI NLYSKLDVIS 660 IIKNTLNERQ LKKFKKSCFG NFLDLKISKF SSQLFYHLIR RQCCSKNRNE LWFNLEGRIH 720 KFGMKDFALI TGLNCGELPA IDMSKIQKGK FNKRYFGGEK TIRRAKLHKV FTEMDKGRNK 780 DVVKMAKLYI LEMFILGKQI RTGINHEYTL LIDDKKQFDS YPWGRISYEI TVDFVKKSIK 840 SNDASAIGVG GFPYALLVWA YETIPLLALN SNFLAMRISF GTPRMNNWAA GVHPEWKDLS 900 EKVFQSEAFD VQPLIATTTE MEMPYMIPFG GVKPSNEKNI SPVDQEHNSD ARTSYNKDHC 960 NWKGSQSVSK DGVENFLFTK IVNIEGILGS LVHDIDNLKS FFHKMCGTAN EAADSEKMRK 1020 PL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 559 | 564 | RKKKKR |
2 | 559 | 565 | RKKKKRK |
3 | 560 | 565 | KKKKRK |
4 | 596 | 613 | RKKIAEQSKGEDGKRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657829.1 | 0.0 | PREDICTED: uncharacterized protein LOC101221625 isoform X6 | ||||
TrEMBL | A0A0A0KI50 | 0.0 | A0A0A0KI50_CUCSA; Uncharacterized protein | ||||
STRING | XP_008440207.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-20 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.102050.2 |