PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.102050.15 | ||||||||
Common Name | Csa_6G489950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 974aa MW: 110593 Da PI: 5.3171 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 15 | 105 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv++p + + + +++p f+++ +g + + t++d +g+sW ++l +k ++ ++++GWk Fv+ + Lk gDf+vF+++g+ f v Cucsa.102050.15 15 FFKVFLPGSCTLH--MSIPPAFMKHLNGT--FPEKATMQDHTGNSWCITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYHGHCLF--DV 100 7777755555544..8*******666666..6778***************..9**999**************************997777..88 PP EEE-S CS B3 95 kvfrk 99 k+f k Cucsa.102050.15 101 KIFGK 105 88876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-23 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 12 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.619 | 13 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-16 | 15 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 15 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.50E-18 | 15 | 103 | No hit | No description |
Pfam | PF09331 | 1.2E-29 | 651 | 783 | IPR015410 | Domain of unknown function DUF1985 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence Send to blast |
MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL 60 EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI 120 PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK 180 VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF 240 FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW 300 EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ 360 SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN 420 VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELSGNSYDDI EENNMDTAEL 480 GVNSCDDIEE NNVDSTEEKQ SPASVEPSRK KKKRKSASFE VQEQKEETSE IDTDQDSRRG 540 VETRQRKKIA EQSKKQGEDG KRKKRGKRGK KSGISGTSSE HDDEEYPLLL PRSSWATTQR 600 INLYSKLDVI SIIKNTLNER QLKKFKKSCF GNFLDLKISK FSSQLFYHLI RRQCCSKNRN 660 ELWFNLEGRI HKFGMKDFAL ITGLNCGELP AIDMSKIQKG KFNKRYFGGE KTIRRAKLHK 720 VFTEMDKGRN KDVVKMAKLY ILEMFILGKQ IRTGINHEYT LLIDDKKQFD SYPWGRISYE 780 ITVDFVKKSI KSNDASAIGV GGFPYALLVW AYETIPLLAL NSNFLAMRIS FGTPRMNNWA 840 AGVHPEWKDL SEKVFQSEAF DVQPLIATTT EMEMPYMIPF GGVKPSNEKN ISPVDQEHNS 900 DARTSYNKDH CNWKGSQSVS KDGVENFLFT KIVNIEGILG SLVHDIDNLK SFFHKMCGTA 960 NEAADSEKMR KPL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 508 | 513 | RKKKKR |
2 | 508 | 514 | RKKKKRK |
3 | 509 | 514 | KKKKRK |
4 | 545 | 564 | RKKIAEQSKKQGEDGKRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657834.1 | 0.0 | PREDICTED: uncharacterized protein LOC101221625 isoform X11 | ||||
TrEMBL | A0A0A0KI50 | 0.0 | A0A0A0KI50_CUCSA; Uncharacterized protein | ||||
STRING | XP_008440207.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.102050.15 |
Publications ? help Back to Top | |||
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