PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.102050.13

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 1003aa MW: 113688 Da PI: 5.2292

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.102050.13	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.4e-16	15	105	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv++p + + + +++p f+++ +g + + t++d +g+sW ++l +k ++ ++++GWk Fv+ + Lk gDf+vF+++g+ f v Cucsa.102050.13 15 FFKVFLPGSCTLH--MSIPPAFMKHLNGT--FPEKATMQDHTGNSWCITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYHGHCLF--DV 100 7777755555544..8*****666666..6778***********..9999**************************997777..88 PP EEE-S CS B3 95 kvfrk 99 k+f k Cucsa.102050.13 101 KIFGK 105 88876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-23	11	108	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-20	12	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.619	13	106	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-13	15	104	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-16	15	106	IPR003340	B3 DNA binding domain
CDD	cd10017	3.02E-18	15	103	No hit	No description
Pfam	PF09331	1.3E-29	680	812	IPR015410	Domain of unknown function DUF1985

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL 60 EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI 120 PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK 180 VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF 240 FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW 300 EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ 360 SEEILYLEYQ PLQTDIEDNR KSANMDSTEN NMDDTSEVGG NLCDNIKENN VDTTELSGNS 420 YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL SGNSYDDIEE 480 NNMDTAELGV NSCDDIEENN VDSTEHCGNL CDNIKDNNVD TTEEKQSPAS VEPSRKKKKR 540 KSASFEVQEQ KEETSEIDTD QDSRRGVETR QRKKIAEQSK GEDGKRKKRG KRGKKSGISG 600 TSSEHDDEVD VHKEYPLLLP RSSWATTQRI NLYSKLDVIS IIKNTLNERQ LKKFKKSCFG 660 NFLDLKISKF SSQLFYHLIR RQCCSKNRNE LWFNLEGRIH KFGMKDFALI TGLNCGELPA 720 IDMSKIQKGK FNKRYFGGEK TIRRAKLHKV FTEMDKGRNK DVVKMAKLYI LEMFILGKQI 780 RTGINHEYTL LIDDKKQFDS YPWGRISYEI TVDFVKKSIK SNDASAIGVG GFPYALLVWA 840 YETIPLLALN SNFLAMRISF GTPRMNNWAA GVHPEWKDLS EKVFQSEAFD VQPLIATTTE 900 MEMPYMIPFG GVKPSNEKNI SPVDQEHNSD ARTSYNKDHC NWKGSQSVSK DGVENFLFTK 960 IVNIEGILGS LVHDIDNLKS FFHKMCGTAN EAADSEKMRK PL*

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL  60
EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI  120
PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK  180
VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF  240
FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW  300
EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ  360
SEEILYLEYQ PLQTDIEDNR KSANMDSTEN NMDDTSEVGG NLCDNIKENN VDTTELSGNS  420
YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL SGNSYDDIEE  480
NNMDTAELGV NSCDDIEENN VDSTEHCGNL CDNIKDNNVD TTEEKQSPAS VEPSRKKKKR  540
KSASFEVQEQ KEETSEIDTD QDSRRGVETR QRKKIAEQSK GEDGKRKKRG KRGKKSGISG  600
TSSEHDDEVD VHKEYPLLLP RSSWATTQRI NLYSKLDVIS IIKNTLNERQ LKKFKKSCFG  660
NFLDLKISKF SSQLFYHLIR RQCCSKNRNE LWFNLEGRIH KFGMKDFALI TGLNCGELPA  720
IDMSKIQKGK FNKRYFGGEK TIRRAKLHKV FTEMDKGRNK DVVKMAKLYI LEMFILGKQI  780
RTGINHEYTL LIDDKKQFDS YPWGRISYEI TVDFVKKSIK SNDASAIGVG GFPYALLVWA  840
YETIPLLALN SNFLAMRISF GTPRMNNWAA GVHPEWKDLS EKVFQSEAFD VQPLIATTTE  900
MEMPYMIPFG GVKPSNEKNI SPVDQEHNSD ARTSYNKDHC NWKGSQSVSK DGVENFLFTK  960
IVNIEGILGS LVHDIDNLKS FFHKMCGTAN EAADSEKMRK PL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	534	539	RKKKKR
2	534	540	RKKKKRK
3	535	540	KKKKRK
4	571	588	RKKIAEQSKGEDGKRKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657831.1	0.0	PREDICTED: uncharacterized protein LOC101221625 isoform X8
TrEMBL	A0A0A0KI50	0.0	A0A0A0KI50_CUCSA; Uncharacterized protein
STRING	XP_008440207.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	3e-20	B3 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.102050.13