PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102050.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 1030aa    MW: 116785 Da    PI: 5.0919
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1615105199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv++p + + +  +++p  f+++ +g    + + t++d +g+sW ++l  +k ++  ++++GWk Fv+ + Lk gDf+vF+++g+  f   vk
  Cucsa.102050.1  15 FFKVFLPGSCTLH--MSIPPAFMKHLNGT--FPEKATMQDHTGNSWCITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYHGHCLF--DVK 101
                     7777755555544..8*******666666..6778***************..9**999**************************997777..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f k
  Cucsa.102050.1 102 IFGK 105
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2311108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2012108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.61913106IPR003340B3 DNA binding domain
SMARTSM010191.2E-1615106IPR003340B3 DNA binding domain
CDDcd100172.68E-1815103No hitNo description
PfamPF023621.5E-1315104IPR003340B3 DNA binding domain
PfamPF093311.3E-29707839IPR015410Domain of unknown function DUF1985
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MMSHSGIEPA SNLEFFKVFL PGSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWCITL  60
EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYHGHCLFDV KIFGKNGCKK AAAAKPASSI  120
PVLETEIAEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA KTGNAVPTLK  180
VKEEPVVEEE DVKPSISHKR KRLQDGSELD HQSKSVVPLN RGRPDNVSNS VEQAIPRGPF  240
FERTMKRWSG QILVEEPLHY MPFFGRKNFR IEPVKIFPVR TNPEVAKYFE ECNQFQEYSW  300
EMLMSHVHSL SANQELKYIQ FEHEEVDSQQ NYQYFQDDDV QDNQSEGLDM IMTDEQPISQ  360
SEEILYLEYQ PLQTDIEDNR KSANMDSTEL VENSYDIEQN NMDDTSEVGG NLCDNIKENN  420
VDTTELSGNS YDNIKENNMD TTEPGGNSCD DIKENNVDST ELGGNLCDNI KENNVDTFEL  480
SGNSYDDIEE NNMDTAELGV NSCDDIEENN VDSTEHCGNL CDNIKDNNVD TTELGGNSFD  540
IEECNIKQEK QSPASVEPSR KKKKRKSASF EVQEQKEETS EIDTDQDSRR GVETRQRKKI  600
AEQSKKQGED GKRKKRGKRG KKSGISGTSS EHDDEVDVHK EYPLLLPRSS WATTQRINLY  660
SKLDVISIIK NTLNERQLKK FKKSCFGNFL DLKISKFSSQ LFYHLIRRQC CSKNRNELWF  720
NLEGRIHKFG MKDFALITGL NCGELPAIDM SKIQKGKFNK RYFGGEKTIR RAKLHKVFTE  780
MDKGRNKDVV KMAKLYILEM FILGKQIRTG INHEYTLLID DKKQFDSYPW GRISYEITVD  840
FVKKSIKSND ASAIGVGGFP YALLVWAYET IPLLALNSNF LAMRISFGTP RMNNWAAGVH  900
PEWKDLSEKV FQSEAFDVQP LIATTTEMEM PYMIPFGGVK PSNEKNISPV DQEHNSDART  960
SYNKDHCNWK GSQSVSKDGV ENFLFTKIVN IEGILGSLVH DIDNLKSFFH KMCGTANEAA  1020
DSEKMRKPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1559564RKKKKR
2559565RKKKKRK
3560565KKKKRK
4596615RKKIAEQSKKQGEDGKRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657832.10.0PREDICTED: uncharacterized protein LOC101221625 isoform X9
TrEMBLA0A0A0KI500.0A0A0A0KI50_CUCSA; Uncharacterized protein
STRINGXP_008440207.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2444533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-20B3 family protein