PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.102040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 310aa MW: 35015.1 Da PI: 9.8226 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.4e-18 | 21 | 111 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv++p+ ++s+ +++p f++ ++g + + +++d+s +sW v+l + ++ +++++GW+eFv++++Lk g f+vF++dg++ f vk Cucsa.102040.1 21 FFKVFLPN--SSSQSMSIPPAFVKYFNGR--IPSEAIIRDQSRNSWHVTL--EELKNIVLFKDGWQEFVDSHHLKRGYFLVFQYDGSHVF--DVK 107 89999555..555559*******655655..56689**************..9**99****************************98888..999 PP EE-S CS B3 96 vfrk 99 +f k Cucsa.102040.1 108 IFGK 111 9876 PP | |||||||
2 | B3 | 36 | 1.3e-11 | 227 | 292 | 35 | 98 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE- CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfr 98 l++ de grsW vk + ++gr+ lt+GW F an L D ++F+ ld++ ++el+vk+ r Cucsa.102040.1 227 NLVIIDEMGRSWVVKAR-PISRGRFSLTSGWGAFFIANSLTIDDECTFEfvLDSNnLCGELKVKITR 292 68999***********2.445556*************************776777789999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-23 | 18 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.084 | 19 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-23 | 20 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-18 | 21 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.72E-18 | 21 | 109 | No hit | No description |
Pfam | PF02362 | 4.2E-16 | 21 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-13 | 192 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-11 | 193 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0031 | 198 | 294 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.21E-9 | 227 | 292 | No hit | No description |
Pfam | PF02362 | 1.1E-8 | 227 | 292 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.602 | 228 | 294 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MAKSVMAVVD PGSRIPSTLE FFKVFLPNSS SQSMSIPPAF VKYFNGRIPS EAIIRDQSRN 60 SWHVTLEELK NIVLFKDGWQ EFVDSHHLKR GYFLVFQYDG SHVFDVKIFG KNGCKKELVS 120 RISNPVPTVK VKDEPLSEED YSTSLTRCKR SDSEVRSTDS SGTAPKSRRR STSNLEEHSP 180 SKTAKHISMK LPSPTPTFKH IVKHWSYKAI QIPQLIMVSN DILLKPNLVI IDEMGRSWVV 240 KARPISRGRF SLTSGWGAFF IANSLTIDDE CTFEFVLDSN NLCGELKVKI TRSLEITQQE 300 KQKTIVQEG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141939.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A0A0KG38 | 0.0 | A0A0A0KG38_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141939.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 5e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.102040.1 |