PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.101830.1

Common Name

Csa_6G487770, LOC101202767

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 699aa MW: 76044.3 Da PI: 7.0363

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.101830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.4	5.6e-09	506	543	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cucsa.101830.1 506 FEHflHPYPSDADKLLLARQTGLSRNQVSNWFINARVR 543 664559******************************88 PP
2	BELL	115.7	2.2e-37	366	437	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eV++rY+ y+eq+q+v++sF+ v+g g+a+pYt+l +ka+SrhFrcLkdaiaeq+ Cucsa.101830.1 366 DRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQL 437 589*******************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.2E-73	293	435	IPR006563	POX domain
Pfam	PF07526	6.9E-50	298	434	IPR006563	POX domain
PROSITE profile	PS50071	12.519	484	547	IPR001356	Homeobox domain
CDD	cd00086	1.07E-12	487	548	No hit	No description
SMART	SM00389	5.3E-10	487	551	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-17	488	555	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-28	490	553	IPR009057	Homeodomain-like
Pfam	PF05920	7.4E-18	504	543	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MGIAKGPLIL SNKATSCANS SMSHDYHHQG IFTFSNATSF DKSNPSSLPA QHIRPDKLRL 60 ESFSDSIPPP PSHLVGIDEH HHQQQLHHVY ASPSSGGTML SDMFNFPPTT PSAAATTVEF 120 SDNFRTLRPP NSASAMQLFL MNPPPPPQPQ PRSPSPPSTS STLHMLLPNP PANPLQGFEG 180 GVGVGDQTTA FGQFAVVESQ GLSLSLHSSS LQHLEDAAVA KAGELRIRDG GILYNYNSNN 240 NQVHGDGGSG STSSILQYSF RNNENSPHSF QANSQIINNP NNHQVQIGFG SSLGVVNVLR 300 NSKYVKPAQE LLEEFCSVGK VQLKKNKFNT KPNPNTESAT NATATTSAAA TGGSTSKDQP 360 PLSAADRIEH QRRKVKLLSM LDEVERRYNL YREQMQMVVN SFDLVMGFGA AAPYTTLTQK 420 AMSRHFRCLK DAIAEQLKQS YEALGEKGGN GGSGITKGET PRLKLLEQSL RQQRAFHQMG 480 MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKL LLARQTGLSR NQVSNWFINA 540 RVRLWKPMVE EMYQLEGKVD TDQQSQEDTP QNNNNNNSNK TQNNAINQQN PTSGAVEEVG 600 AEYTAGHDYS DLHDVWRHGS SGSDHQQHYG TMPEDVTAAA DMSPGPTLIR FGTTNTATGD 660 VSLTLGLRHA GNTSAAAAAA AAAAVDNPSF SLRDFGQS*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MGIAKGPLIL SNKATSCANS SMSHDYHHQG IFTFSNATSF DKSNPSSLPA QHIRPDKLRL  60
ESFSDSIPPP PSHLVGIDEH HHQQQLHHVY ASPSSGGTML SDMFNFPPTT PSAAATTVEF  120
SDNFRTLRPP NSASAMQLFL MNPPPPPQPQ PRSPSPPSTS STLHMLLPNP PANPLQGFEG  180
GVGVGDQTTA FGQFAVVESQ GLSLSLHSSS LQHLEDAAVA KAGELRIRDG GILYNYNSNN  240
NQVHGDGGSG STSSILQYSF RNNENSPHSF QANSQIINNP NNHQVQIGFG SSLGVVNVLR  300
NSKYVKPAQE LLEEFCSVGK VQLKKNKFNT KPNPNTESAT NATATTSAAA TGGSTSKDQP  360
PLSAADRIEH QRRKVKLLSM LDEVERRYNL YREQMQMVVN SFDLVMGFGA AAPYTTLTQK  420
AMSRHFRCLK DAIAEQLKQS YEALGEKGGN GGSGITKGET PRLKLLEQSL RQQRAFHQMG  480
MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKL LLARQTGLSR NQVSNWFINA  540
RVRLWKPMVE EMYQLEGKVD TDQQSQEDTP QNNNNNNSNK TQNNAINQQN PTSGAVEEVG  600
AEYTAGHDYS DLHDVWRHGS SGSDHQQHYG TMPEDVTAAA DMSPGPTLIR FGTTNTATGD  660
VSLTLGLRHA GNTSAAAAAA AAAAVDNPSF SLRDFGQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	493	551	5	63	Homeobox protein Meis2
3k2a_B	4e-16	493	551	5	63	Homeobox protein Meis2
4xrm_A	4e-16	493	551	5	63	Homeobox protein Meis2
4xrm_B	4e-16	493	551	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657809.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_011657810.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
TrEMBL	A0A0A0KL26	0.0	A0A0A0KL26_CUCSA; Uncharacterized protein
STRING	XP_008440170.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-128	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Cucsa.101830.1
Entrez Gene	101202767

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]