PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.100130.2
Common NameCsa_7G031530, LOC101216326
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 408aa    MW: 44555.6 Da    PI: 5.3171
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.100130.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ + +++ + +C+++   lC +C  + H+       H++
  Cucsa.100130.2  4 ICDFCAQQRSIVYCRSDAAALCLSCDRNVHSAnalsrrHSR 44
                    7*****************************65677777766 PP
2CCT62.41.5e-21350393144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a++RYkeK+k RkFeKk+rY+sRK++A++R RvKGrFvk+ 
  Cucsa.100130.2 350 RSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAG 393
                     889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.727147IPR000315B-box-type zinc finger
CDDcd000212.20E-6447No hitNo description
SMARTSM003361.3E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8454390IPR000315B-box-type zinc finger
CDDcd000210.003794776No hitNo description
PfamPF062031.8E-16350392IPR010402CCT domain
PROSITE profilePS5101715.329350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGYICDFCAQ QRSIVYCRSD AAALCLSCDR NVHSANALSR RHSRTLLCDR CHSQAAFVRC  60
PEENISLCQN CDYMGHSSSA SISSRKRQPI NCYSGCPTAA ELSSIWSFVL DLPSGSDACE  120
QELGLMSIAE NSAVNAWGPN DKAGQNVSGV DETNEFSSVD KSIWYGSSSM PHIMDQPITM  180
DATSPKLHYP GRKGPEIDIE DDLYESLNMD EDSLNIENYE ELFGVSLSYS EELLENGGID  240
SLFRMKNLSA AKSGCPGGAA AEGASVSFVN NVMQPANSNA ASADSVMSAK TEPVLCYNNK  300
QEHSGLSFSG MTGESSAGEH QDCGASSMLL MGEPPWCSMA TETSFQSSNR SDAVMRYKEK  360
KKARKFEKKV RYASRKVRAD TRRRVKGRFV KAGEAYDYDP LSQTRSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144557.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-138COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0A0K5270.0A0A0A0K527_CUCSA; Uncharacterized protein
STRINGXP_004171204.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-130CONSTANS-like 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]