PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.100070.1
Common NameCsa_7G030500, LOC101213119
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 475aa    MW: 53788.8 Da    PI: 6.4627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.100070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-09416472148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                      r+rW+ eE+e l+++v+++ +       W++I +        +Rt+ ++k++w+++l
   Cucsa.100070.1 416 RMRWSVEEEEMLKEGVRKFSSTtnknlPWRKILEFGRhifdDTRTPVDLKDKWRSLL 472
                      89*******************************9999*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.9E-81277IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.17E-71879IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002492.7E-62974IPR001965Zinc finger, PHD-type
PROSITE patternPS0135903073IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS512949.952411474IPR017930Myb domain
SuperFamilySSF466893.29E-9414472IPR009057Homeodomain-like
SMARTSM007173.5E-7415474IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-9415472IPR009057Homeodomain-like
PfamPF002493.5E-7416472IPR001005SANT/Myb domain
CDDcd116604.06E-12418472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
NVEDNTLHDA SNKETDDVLD KIDCFQKDTC TRCDESGDLL VCTEPGCPIA LHELCMSCEP  60
SFDEDGRFYC PYCSYKRALI RVNELRRKTM VAKRALSDFI DTRMVGGDNS PRMGEAGKKK  120
SDDVSTCGGD VNLPNHGSHL CNESSRDHDI QVEQNQSNEG EDRARAGGDV EPTSMVGVNS  180
EIHDGPIVSN VSNSSHSAPT VQPCEDRMDE ETHEAETSGT HQVESLEDKE DGITMDKEIL  240
RPIDDIQDDR IAMDHGQLET PGAYHYGEAT AQELQEKDGG REQIQPDNEK MLENIVPASG  300
NNDLKNKTTV KKRRFKTKAN RRTDLQNVNS PRKSLRLQTP EEKKSPRIRT PEPRRKSPHI  360
QTPEPRKNSP RLQTPKPQKD NTIKIEKVSV SRNLKPQPAS HNQLKSLDFH SGKRKRMRWS  420
VEEEEMLKEG VRKFSSTTNK NLPWRKILEF GRHIFDDTRT PVDLKDKWRS LLGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315KKRRFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144625.10.0PREDICTED: uncharacterized protein LOC101213119
RefseqXP_011658646.10.0PREDICTED: uncharacterized protein LOC101213119
TrEMBLA0A0A0K5180.0A0A0A0K518_CUCSA; Uncharacterized protein
STRINGXP_004167056.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.19e-06TRF-like 5
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]