PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.099970.1

Common Name

Csa_7G029420

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 791aa MW: 91169.9 Da PI: 6.8373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.099970.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.3e-31	82	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel+p Cucsa.099970.1 82 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVP 173 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-29	82	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-33	294	386	IPR018289	MULE transposase domain
Pfam	PF04434	2.0E-12	562	608	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.633	578	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-9	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MDNEVIEFDI GLGGGSGREG DDYSMGMVHH SIEDEEMVDS PPLSSLGGGA GSGEIYLPEG 60 DLLDLEPYER MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF 120 RNLNEKRTKD REIKRPRTIT RVGCKASLSV KMHDSGKWVV SGFVREHNHE LVPPDQVHCL 180 RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQRSL 240 EGDIQLLLDY LRQMHSENPN FFYAVQGEED QCVGNVFWAD PKARMNYTYF GDTVTFDTTY 300 RSNRYRLPFA PFTGVNHHGQ PVLFGCAFLI NESEASFNWL FRTWLLAMSG RPPVSITTDH 360 DSVIQSAITQ VFPETRHRFC KWHIFKKCQE MLSHVFLKHP SFEADFHKCV NLTDSIEEFE 420 SCWLSLVDRY DLRDHEWLQT VYSARRQWVP VYLRDTFFAE MSITQRSDSM NSYFDGYVNA 480 STNLSQFFKL YEKALESRNE KEVKADYDTM NTSPVLKTPS PMEKQVSELY TRKLFSRFQE 540 ELVGTLTFMA SKADDDGEII TYQVAKYGED HKAHYVKFNV LEMRASCSCQ MFEFSGLLCR 600 HILAVFRVTN ILTLPSYYIL KRWTRNAKSN VVLEDHVNDI YNNYLESHTV RYNTLRHEAF 660 KFIEEGAKSV DMYNVVKDAL QEAAKRVAQT TRNDGKISIM NGRIKVDPVN VKSYANHSSS 720 RDHDENLSKN MSEDELDKKI NELTNELECA NRKCEVYRSN LFSVLKDIED HKLQLSIKVQ 780 NIKISMKDSI *

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MDNEVIEFDI GLGGGSGREG DDYSMGMVHH SIEDEEMVDS PPLSSLGGGA GSGEIYLPEG  60
DLLDLEPYER MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF  120
RNLNEKRTKD REIKRPRTIT RVGCKASLSV KMHDSGKWVV SGFVREHNHE LVPPDQVHCL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQRSL  240
EGDIQLLLDY LRQMHSENPN FFYAVQGEED QCVGNVFWAD PKARMNYTYF GDTVTFDTTY  300
RSNRYRLPFA PFTGVNHHGQ PVLFGCAFLI NESEASFNWL FRTWLLAMSG RPPVSITTDH  360
DSVIQSAITQ VFPETRHRFC KWHIFKKCQE MLSHVFLKHP SFEADFHKCV NLTDSIEEFE  420
SCWLSLVDRY DLRDHEWLQT VYSARRQWVP VYLRDTFFAE MSITQRSDSM NSYFDGYVNA  480
STNLSQFFKL YEKALESRNE KEVKADYDTM NTSPVLKTPS PMEKQVSELY TRKLFSRFQE  540
ELVGTLTFMA SKADDDGEII TYQVAKYGED HKAHYVKFNV LEMRASCSCQ MFEFSGLLCR  600
HILAVFRVTN ILTLPSYYIL KRWTRNAKSN VVLEDHVNDI YNNYLESHTV RYNTLRHEAF  660
KFIEEGAKSV DMYNVVKDAL QEAAKRVAQT TRNDGKISIM NGRIKVDPVN VKSYANHSSS  720
RDHDENLSKN MSEDELDKKI NELTNELECA NRKCEVYRSN LFSVLKDIED HKLQLSIKVQ  780
NIKISMKDSI *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144566.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_011658644.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0A0K508	0.0	A0A0A0K508_CUCSA; Uncharacterized protein
STRING	XP_004162884.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Cucsa.099970.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]