PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.097950.2

Common Name

Csa_1G045550, LOC101215160

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 335aa MW: 37510.3 Da PI: 4.4486

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.097950.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	99	152	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Cucsa.097950.2 99 KKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 152 56689************************************************9 PP
2	HD-ZIP_I/II	130.2	8.4e-42	98	188	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk + e+L ke+++L++e+ Cucsa.097950.2 98 EKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEI 188 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-19	84	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	94	154	IPR001356	Homeobox domain
SMART	SM00389	3.2E-19	97	158	IPR001356	Homeobox domain
CDD	cd00086	6.01E-18	99	155	No hit	No description
Pfam	PF00046	1.5E-16	99	152	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	101	161	IPR009057	Homeodomain-like
PRINTS	PR00031	9.7E-6	125	134	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	129	152	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.7E-6	134	150	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-14	154	195	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAGRRVYGGD DGGSISGGSS NHSVLLQNRC GSFASEPLNA LFLSGSSSSS SPSLLGSRSM 60 MSFEDIRGGN GSNRSFFCPL DSEDNGDEDL DDYFHHPEKK RRLTVDQVRF LEKSFETENK 120 LEPERKVQLA KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY EALQSSYGSL KVDYENLLKE 180 KDSLKAEILL LTDKLLHKEK ERGNSVLSEV DKFGEELPHN LVADSNLEDE VSKSSKLGCK 240 QEDISSVKSD IFDSDSPHYT DGVHSSLLEP GDSSYIFDPD QSDLSQDEED NLGRNLLPPY 300 IFPKLEDVDY SDPPTSSCNF VFPIEDNALW SWSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152444.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBL	A0A0A0LTZ6	0.0	A0A0A0LTZ6_CUCSA; Uncharacterized protein
STRING	XP_004152443.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-44	homeobox 1

Link Out ? help Back to Top
Phytozome	Cucsa.097950.2
Entrez Gene	101215160

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]