PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.097130.1
Common NameCsa_4G001760, LOC101206725
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 342aa    MW: 38401.7 Da    PI: 7.6165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.097130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-085073226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +t+lC +f+  G C++G++C F+H+
  Cucsa.097130.1 50 GTSLCVYFLN-GSCNRGSQCLFSHS 73
                    799***9999.*************8 PP
2zf-CCCH19.81.4e-0677102227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k++ C+ff+    C+ Gd+C F+H++
  Cucsa.097130.1  77 KRATCKFFFSLQGCRNGDSCLFSHDQ 102
                     99**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1974875IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-64874IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-64973IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0375102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.35776103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-477103IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-477102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-681102IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
VPYVASSYSR TNQVAGKLAD VIKQMKVFYA KEEPNNHSLS SMNNGFNDNG TSLCVYFLNG  60
SCNRGSQCLF SHSLQSKRAT CKFFFSLQGC RNGDSCLFSH DQSPSKSLSF KSTLCLPEDG  120
IAHASTLEKY FPKSGGCILV MDDAGFHFSS NLARHCEPSK IICTTNLSHS DIYDSSLNDA  180
KKIWELSHPD ETIISNGENQ IPWYDVKCIL WFPRFASSKE NLDIEKILLQ NFFDLLAIRI  240
LADALHGVQV ILTMNNIRFS QLQVEKLGRE SFFFLSESFP YDERSFGELP DKITTKKGML  300
TSKPVSYVFD LRPPSSALFG NYRATLRQCL YNVERPSLVC P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652935.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
TrEMBLA0A0A0KV690.0A0A0A0KV69_CUCSA; Uncharacterized protein
STRINGXP_004152252.10.0(Cucumis sativus)
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]