PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.096680.3 | ||||||||
Common Name | Csa_4G003720, LOC101212435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 26457.9 Da PI: 4.177 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 9 | 66 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d+++++itY+++Hnh+ Cucsa.096680.3 9 DFWSWRKYGQKPIKGSPYPRGYYRCSTTkGCSAKKQVERCKTDGSMFIITYTSSHNHP 66 99***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-31 | 3 | 68 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-26 | 5 | 68 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-35 | 7 | 67 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 9 | 66 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.561 | 9 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MKNEGPPPDF WSWRKYGQKP IKGSPYPRGY YRCSTTKGCS AKKQVERCKT DGSMFIITYT 60 SSHNHPGPNI STLNLDQNYQ QEIDPPQPLD RDDDEDHHDL VPNQAQDHDN NSNNDDKNSI 120 IISQSTEEEE VEEVEEEEED ELLLVEDEEK KGIEKIKDEC LDQEPIIISS SSNSSSCCDE 180 LMIIKTKKSE IENHDHFFDE LEELPIPPPF SSTLMRSSYS FDEIRISAAP S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-21 | 9 | 69 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-21 | 9 | 69 | 18 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 0.0 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152355.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | A0A0A0KVB9 | 1e-168 | A0A0A0KVB9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004152355.1 | 1e-169 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-31 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.096680.3 |
Entrez Gene | 101212435 |
Publications ? help Back to Top | |||
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