PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.096680.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 277aa    MW: 31515 Da    PI: 4.6872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.096680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-3054111359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d+++++itY+++Hnh+
  Cucsa.096680.1  54 DFWSWRKYGQKPIKGSPYPRGYYRCSTTkGCSAKKQVERCKTDGSMFIITYTSSHNHP 111
                     99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3141113IPR003657WRKY domain
SuperFamilySSF1182902.75E-2648113IPR003657WRKY domain
SMARTSM007741.0E-3552112IPR003657WRKY domain
PfamPF031062.0E-2554111IPR003657WRKY domain
PROSITE profilePS5081130.56154113IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNIIFFQLNP HQKKNNPFPK KRKVVQKTVV TVKIGSKKAA IGIGKMKNEG PPPDFWSWRK  60
YGQKPIKGSP YPRGYYRCST TKGCSAKKQV ERCKTDGSMF IITYTSSHNH PGPNISTLNL  120
DQNYQQEIDP PQPLDRDDDE DHHDLVPNQA QDHDNNSNND DKNSIIISQS TEEEEVEEVE  180
EEEEDELLLV EDEEKKGIEK IKDECLDQEP IIISSSSNSS SCCDELMIIK TKKSEIENHD  240
HFFDELEELP IPPPFSSTLM RSSYSFDEIR ISAAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21541141880Disease resistance protein RRS1
5w3x_D2e-21541141880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152355.11e-131PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A0A0KVB91e-130A0A0A0KVB9_CUCSA; Uncharacterized protein
STRINGXP_004152355.11e-130(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-31WRKY DNA-binding protein 35