PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.096050.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 722aa MW: 83965.9 Da PI: 5.1935

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.096050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.3	9.5e-22	112	196	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ + ++w+v++++leHnH++ Cucsa.096050.1 112 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEVN-----SRRKETRTGCLAMIRLRLVDFNRWRVDEVKLEHNHSFD 196 69***************************************9888.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-19	112	196	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-27	316	409	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	603	639	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-4	614	641	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
IEEGSQNSGE LVEEDGNNLE NECEELFRID DDDFDDDRDE KVLLDGLRNH GNDVNISDGN 60 ESFGDDISIN ADHEHDRDES PLIDCQIDLS GDKDYPSPVA GMEFESYDDA YNYYNCYAKE 120 LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTLKEVNSR RKETRTGCLA MIRLRLVDFN 180 RWRVDEVKLE HNHSFDPERA QNSKSHKRMD TGTKRKVEPT IDVEVRTIKL YRGSGLDAID 240 HQGLNSNGES KIHVYKPRLL LLKKGDAQVI HTFFHRVQLT DPNFFYVMDL YEEGLLRNVF 300 WINSRCRAAY NYFNDVVAFD TTCLSSNFEI PLFAFVGINH HGQSILLGCG LLADETLETY 360 VWLLRAWLTC MSGRPPQTII SNRCKALQGA IAEVFPRAHH RLCLSYVMQS ILENVGELQE 420 SETFYAVLSR TIYNYVKVEE FEMAWEDMIQ HFGIKNNECI QSLYDERERW APVFSKDTFF 480 AGMYNCQKGD WIVPFFHGYV HQQTSLKEFF DIYELVLHKK QEMETHKDLE SSDLSPLLKS 540 RCLFELQLAK LYTMEIFSKF QDEIMMMSSC FSLSQVETNG GPIMTFMVKE REGEEIPRDG 600 RAYEVMYDKA GGEVRCICNC FNFKGYLCRH ALFILSYNGI DEIPYQYILS RWRKDFKRLY 660 VPDLGCHNID ITNPVQWFDH LYRRATQVVQ EGMTSQDHYM VAWQALKESL NKVRLVPDRH 720 V*

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

IEEGSQNSGE LVEEDGNNLE NECEELFRID DDDFDDDRDE KVLLDGLRNH GNDVNISDGN  60
ESFGDDISIN ADHEHDRDES PLIDCQIDLS GDKDYPSPVA GMEFESYDDA YNYYNCYAKE  120
LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTLKEVNSR RKETRTGCLA MIRLRLVDFN  180
RWRVDEVKLE HNHSFDPERA QNSKSHKRMD TGTKRKVEPT IDVEVRTIKL YRGSGLDAID  240
HQGLNSNGES KIHVYKPRLL LLKKGDAQVI HTFFHRVQLT DPNFFYVMDL YEEGLLRNVF  300
WINSRCRAAY NYFNDVVAFD TTCLSSNFEI PLFAFVGINH HGQSILLGCG LLADETLETY  360
VWLLRAWLTC MSGRPPQTII SNRCKALQGA IAEVFPRAHH RLCLSYVMQS ILENVGELQE  420
SETFYAVLSR TIYNYVKVEE FEMAWEDMIQ HFGIKNNECI QSLYDERERW APVFSKDTFF  480
AGMYNCQKGD WIVPFFHGYV HQQTSLKEFF DIYELVLHKK QEMETHKDLE SSDLSPLLKS  540
RCLFELQLAK LYTMEIFSKF QDEIMMMSSC FSLSQVETNG GPIMTFMVKE REGEEIPRDG  600
RAYEVMYDKA GGEVRCICNC FNFKGYLCRH ALFILSYNGI DEIPYQYILS RWRKDFKRLY  660
VPDLGCHNID ITNPVQWFDH LYRRATQVVQ EGMTSQDHYM VAWQALKESL NKVRLVPDRH  720
V*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152332.2	0.0	PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A1S3BXI1	0.0	A0A1S3BXI1_CUCME; protein FAR1-RELATED SEQUENCE 8
STRING	XP_004152332.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Cucsa.096050.1

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]