PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.095510.1

Common Name

Csa_4G010940, LOC101222520

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 989aa MW: 108865 Da PI: 5.3751

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.095510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.2e-29	590	641	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ Cucsa.095510.1 590 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 641 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	575	661	IPR003035	RWP-RK domain
Pfam	PF02042	9.4E-26	593	641	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.41E-22	882	973	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-23	885	967	No hit	No description
PROSITE profile	PS51745	20.763	888	970	IPR000270	PB1 domain
SMART	SM00666	7.2E-22	888	970	IPR000270	PB1 domain
Pfam	PF00564	6.5E-17	890	969	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MENPFSTKEE GTMSWGPSRT QAETLTSTDV GMRIMSPEDV LHSFSELMSF DSYAGWGNNC 60 STMDQIFTSC GFSSIPPMST CPSMEGSTFP EGMSVSHEAF SLNEIDGTSI SVANSFTCGD 120 KMMFQQPDTG FGVSEVSDNT NEAGSKSNDD LLDSCLISRP IGWSLDERML RALSLFKESS 180 PGGILAQVWV PVKHGNQFFL STSDQPYLLD QMLTGYREVS RSYTFSAEGK LGSLLGLPGR 240 VFTTKIPEWT SNVRYYSKNE YLRMEHAIGH EVYGSIALPV FSNELEKSCC AVLEVVTTKE 300 KSDFDAEIDI VSRALEIVNL RTVAPPRLYP QCLKQNQKSA LAEIMDVLRA VCHAHRLPLA 360 LTWIPCCITL EAVDDAARVR VKEKIISPKE KSVLCIEETA CYVNDKATQG FVHACMEHHL 420 EEGQGLAGKA LLSNYPFFYP DVKTYDINKY PLVHHARKFG LNAAVAIRLR STYTGDDDYI 480 LEFFLPVNMK GSSEQQLLLN NLSGTMQRMC RSLRTVSKEE LMGAKDPDTG FQSGLIGKSA 540 TTSRRNSQST VTDSETRVSN SVNNGTEAEC PKKQMTNGLR RQGEKKRSTA EKNVSLSVLQ 600 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI LRWPSRKINK VNRSLRKIQT VLDSVKGVEG 660 GLKFDPTTGG LMAAGSLIPE LNGQNNLLFS DNNTSIRNLE PFLQDVNSVP PISFNGQNSA 720 MKLEMEDSFV TMPQRISSRN ILIPEKEPNV CQLDCSEGSK STGLDAASCQ LADLDMMGGW 780 EVAGNATGSI IAKKSNRLDF VENDLRSSDA DCQFMAKSSC SFAAADEMGT VLEGTDGINE 840 HYQPTTSSMT DSSNGSGLLI HGSSSSCQSV EERKHLQEKI SCVDSDSKIV VKASYKDDTV 900 RFKFDPSLGY LQLYEEVGKR FKLNHGTFQL KYLDDEKEWV MLVSNSDLQE CLEVMDEIGT 960 RNVKFLVRDI TSAVGSSGSS SCFLPRGS*

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MENPFSTKEE GTMSWGPSRT QAETLTSTDV GMRIMSPEDV LHSFSELMSF DSYAGWGNNC  60
STMDQIFTSC GFSSIPPMST CPSMEGSTFP EGMSVSHEAF SLNEIDGTSI SVANSFTCGD  120
KMMFQQPDTG FGVSEVSDNT NEAGSKSNDD LLDSCLISRP IGWSLDERML RALSLFKESS  180
PGGILAQVWV PVKHGNQFFL STSDQPYLLD QMLTGYREVS RSYTFSAEGK LGSLLGLPGR  240
VFTTKIPEWT SNVRYYSKNE YLRMEHAIGH EVYGSIALPV FSNELEKSCC AVLEVVTTKE  300
KSDFDAEIDI VSRALEIVNL RTVAPPRLYP QCLKQNQKSA LAEIMDVLRA VCHAHRLPLA  360
LTWIPCCITL EAVDDAARVR VKEKIISPKE KSVLCIEETA CYVNDKATQG FVHACMEHHL  420
EEGQGLAGKA LLSNYPFFYP DVKTYDINKY PLVHHARKFG LNAAVAIRLR STYTGDDDYI  480
LEFFLPVNMK GSSEQQLLLN NLSGTMQRMC RSLRTVSKEE LMGAKDPDTG FQSGLIGKSA  540
TTSRRNSQST VTDSETRVSN SVNNGTEAEC PKKQMTNGLR RQGEKKRSTA EKNVSLSVLQ  600
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI LRWPSRKINK VNRSLRKIQT VLDSVKGVEG  660
GLKFDPTTGG LMAAGSLIPE LNGQNNLLFS DNNTSIRNLE PFLQDVNSVP PISFNGQNSA  720
MKLEMEDSFV TMPQRISSRN ILIPEKEPNV CQLDCSEGSK STGLDAASCQ LADLDMMGGW  780
EVAGNATGSI IAKKSNRLDF VENDLRSSDA DCQFMAKSSC SFAAADEMGT VLEGTDGINE  840
HYQPTTSSMT DSSNGSGLLI HGSSSSCQSV EERKHLQEKI SCVDSDSKIV VKASYKDDTV  900
RFKFDPSLGY LQLYEEVGKR FKLNHGTFQL KYLDDEKEWV MLVSNSDLQE CLEVMDEIGT  960
RNVKFLVRDI TSAVGSSGSS SCFLPRGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152313.1	0.0	PREDICTED: protein NLP9
TrEMBL	A0A0A0KTS6	0.0	A0A0A0KTS6_CUCSA; Uncharacterized protein
STRING	XP_004152313.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.095510.1
Entrez Gene	101222520

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]