PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095220.1
Common NameCsa_4G011750, LOC101217400
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 492aa    MW: 54363.8 Da    PI: 5.5146
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-061351537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     C+ ++++ ++l+C+ ++  lC  C  + H+       H
  Cucsa.095220.1 13 PCDFCNDQVAILYCRADSAKLCLFCDKHVHSAnllsrkH 51
                    7***************************99545555556 PP
2zf-B_box24.36.5e-085499342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+++ ++++++ C +++  lC++C    H +      H+++p+
  Cucsa.095220.1 54 SQICDNCRSEPVSIRCSTDNLVLCQECDWDAHGScsvsaaHDRTPI 99
                    689*************************999954889999988876 PP
3CCT61.62.6e-21442485144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeKrktR+++K irYesRKa+A++R+RvKGrFvk++
  Cucsa.095220.1 442 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKAN 485
                     7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.4E-13956IPR000315B-box-type zinc finger
PROSITE profilePS501199.399956IPR000315B-box-type zinc finger
CDDcd000211.01E-51256No hitNo description
PROSITE profilePS5011910.6235299IPR000315B-box-type zinc finger
CDDcd000212.17E-75699No hitNo description
SMARTSM003360.755799IPR000315B-box-type zinc finger
PfamPF062038.4E-16442484IPR010402CCT domain
PROSITE profilePS5101715.031442484IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVCSKSTTGE TVPCDFCNDQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC  60
RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPIE GFTGCPSALE LVSLWGFDLG  120
DKKLEESEML VQNWVCSQDL VMPIDSWASR ASATAFNDLI VPNDNPFLFA NLNCTDAASM  180
FKKQSPSCGK HKQVIYKQLV ELLKRDFEGG DDVEGDDTRD GDAGGEDVGL QSMVPETTNG  240
DCYWQGDLEG RQISKEDDGV FVGAAPPPLL QQQASFTSLL TMPSHVGLKD NERSVDETGV  300
WDSSPNRQST QIWDFHLGRL RGHKDSNTFD DAYGTGDMGF TIKNFGEFLK ETSPTSAKLL  360
GETYQINCSS VHDDIPSFNN NVNNTTLSQG AVTCESINMP NDKLKGGSKS FQAIKQPIII  420
KGDSILSTST TKADLELLAQ NRGNAMQRYK EKRKTRRYDK YIRYESRKAR ADTRKRVKGR  480
FVKANEAPVF G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152125.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A0A0KU410.0A0A0A0KU41_CUCSA; Uncharacterized protein
STRINGXP_004152125.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-112B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]