PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.094760.1 | ||||||||
Common Name | Csa_4G015740, LOC101211375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 29762.5 Da PI: 6.0134 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.6 | 1.5e-26 | 75 | 165 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++vGF+vr++++++s+ n++++ ++fvCskeg+r+++ +++ + tr gC+a++++ +++ gkw vtk++++HnH l Cucsa.094760.1 75 EFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCrKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLL 165 6*****************************************9987723333448899******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-23 | 75 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDCQSSHTFD SDESDIDIQT EIYEKGGSID DIRNDLDFCL RDDDKVAEQS VVDLPMDGVE 60 PYIGMEFSSR DEAREFYVNY GRRVGFTVRI HHNRRSRVNN QVIGQDFVCS KEGFRAKKYV 120 CRKDRILPAP PITREGCQAM MRLALRDGGK WAVTKFVKDH NHLLLSPSKV PWKGSGKNLS 180 EDEKDKRIRE LSLELYNERQ KYKRKCAAYE EQLKTIWKEL EMHTECISNK VAEVVKSIRE 240 VEEEEESKGS NERWI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 0.0 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152100.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0A0KW49 | 0.0 | A0A0A0KW49_CUCSA; Uncharacterized protein | ||||
STRING | XP_004167865.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-37 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.094760.1 |
Entrez Gene | 101211375 |
Publications ? help Back to Top | |||
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