PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.094060.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 184aa    MW: 21228.8 Da    PI: 7.752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.094060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-0793109926
                     GGGTS--TTTTT-SS-SS CS
         zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                     f r+G C+ Gd C FaHg
  Cucsa.094060.1  93 F-RSGSCPKGDFCEFAHG 109
                     4.55*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.83E-583114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.19784111IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-584110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-684112IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-688109IPR000571Zinc finger, CCCH-type
SMARTSM0035613119142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFQGFVFGIN DVYGHEFSVV SLPELTVGNL TEKTDDTAVF SSDEFRMYSY KIQRCPRNRS  60
HDWTECPYAH RGEKAQRRDP RQFNYTAVAC PAFRSGSCPK GDFCEFAHGV FEYWLHPARY  120
RTRACNAGRF CQRKVCFFAH SPEELRPETK QKSSFSAHQQ RVAVDAIESP PEEKNDGILE  180
IPAR
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146938.11e-137PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650367e-67C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A1S3BYP81e-126A0A1S3BYP8_CUCME; zinc finger CCCH domain-containing protein 54
STRINGXP_004146938.11e-137(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-69C3H family protein