PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.093850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 237aa    MW: 27467.2 Da    PI: 8.3055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.093850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-112771899
                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +p kf++ +g+  e s  ++l  ++g +Wev l  +k  g+++++  W++Fv+   ++ g  ++Fk++g+s+f  +v +f++
  Cucsa.093850.1  2 MPSKFIRMFGK--ELSSSVVLIVPNGGVWEVGL--EKFNGQIWFSHSWNKFVDYYSIDYGFLLIFKYEGNSSF--HVLIFDT 77
                    6999**98884..47789***************..**************************************..****997 PP

2B336.21.1e-111482321298
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     +++  ++p +f +++ + + e ++++ ++++  +W++ +  ++ s +  ++ GW  F k+ +L++gD+vvF+l++  +++ ++++vf+
  Cucsa.093850.1 148 SKRFKYIPSSFGKKYLSREDEIIEIQGRSSERGRWKIWC--KGAS-AKRMGVGWGVFRKESNLRVGDVVVFELVKMnKNRVMKFTVFS 232
                     445569*********666666678888888889999888..5555.557899********************9987688888888886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0023178IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098178IPR003340B3 DNA binding domain
CDDcd100172.23E-10276No hitNo description
Gene3DG3DSA:2.40.330.101.6E-15277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-16277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.855137234IPR003340B3 DNA binding domain
SMARTSM010190.0051142234IPR003340B3 DNA binding domain
PfamPF023624.4E-9147232IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-10147231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-6147232No hitNo description
Gene3DG3DSA:2.40.330.106.1E-11150230IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
KMPSKFIRMF GKELSSSVVL IVPNGGVWEV GLEKFNGQIW FSHSWNKFVD YYSIDYGFLL  60
IFKYEGNSSF HVLIFDTTTF EIQYPHHDGM KLENAVEKSD YAISISSSHD CSDQFIDDND  120
DDNECRYELH TTKRSKIKLE SCDHEFMSKR FKYIPSSFGK KYLSREDEII EIQGRSSERG  180
RWKIWCKGAS AKRMGVGWGV FRKESNLRVG DVVVFELVKM NKNRVMKFTV FSSGSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-139LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-139LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146931.11e-129PREDICTED: B3 domain-containing protein At3g18960-like
TrEMBLA0A0A0KWD71e-128A0A0A0KWD7_CUCSA; Uncharacterized protein
STRINGXP_004146931.11e-129(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-26B3 family protein