PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.093850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 237aa MW: 27467.2 Da PI: 8.3055 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.4 | 3.9e-11 | 2 | 77 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p kf++ +g+ e s ++l ++g +Wev l +k g+++++ W++Fv+ ++ g ++Fk++g+s+f +v +f++ Cucsa.093850.1 2 MPSKFIRMFGK--ELSSSVVLIVPNGGVWEVGL--EKFNGQIWFSHSWNKFVDYYSIDYGFLLIFKYEGNSSF--HVLIFDT 77 6999**98884..47789***************..**************************************..****997 PP | |||||||
2 | B3 | 36.2 | 1.1e-11 | 148 | 232 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 +++ ++p +f +++ + + e ++++ ++++ +W++ + ++ s + ++ GW F k+ +L++gD+vvF+l++ +++ ++++vf+ Cucsa.093850.1 148 SKRFKYIPSSFGKKYLSREDEIIEIQGRSSERGRWKIWC--KGAS-AKRMGVGWGVFRKESNLRVGDVVVFELVKMnKNRVMKFTVFS 232 445569*********666666678888888889999888..5555.557899********************9987688888888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0023 | 1 | 78 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.098 | 1 | 78 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.23E-10 | 2 | 76 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-15 | 2 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-16 | 2 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.855 | 137 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0051 | 142 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-9 | 147 | 232 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-10 | 147 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-6 | 147 | 232 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-11 | 150 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
KMPSKFIRMF GKELSSSVVL IVPNGGVWEV GLEKFNGQIW FSHSWNKFVD YYSIDYGFLL 60 IFKYEGNSSF HVLIFDTTTF EIQYPHHDGM KLENAVEKSD YAISISSSHD CSDQFIDDND 120 DDNECRYELH TTKRSKIKLE SCDHEFMSKR FKYIPSSFGK KYLSREDEII EIQGRSSERG 180 RWKIWCKGAS AKRMGVGWGV FRKESNLRVG DVVVFELVKM NKNRVMKFTV FSSGSI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 1e-139 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 1e-139 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146931.1 | 1e-129 | PREDICTED: B3 domain-containing protein At3g18960-like | ||||
TrEMBL | A0A0A0KWD7 | 1e-128 | A0A0A0KWD7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146931.1 | 1e-129 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.093850.1 |