PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.092420.1
Common NameCsa_1G423030
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 398aa    MW: 45475.2 Da    PI: 6.027
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.092420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.71.7e-20207259154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     kpr+ Wt+eLH++F+ea e L G+++ +P +il++m+ + Lt+e+v+SHLQk+R
  Cucsa.092420.1 207 KPRISWTKELHAKFIEAYEIL-GEKERVPNNILKHMNDPRLTRENVASHLQKHR 259
                     79*******************.99999**************************9 PP
2Response_reg64.74.4e-22251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl +dD+ + ++ l q+lek +y +v +++ +eea++l+++++  +D++++ +   +mdG+e+l+ i   ++++p+i+v+a+++ +++++ l  G
  Cucsa.092420.1  25 VLAIDDDIVCLRYLVQLLEKCQY-KVSATTRAEEAIRLINDEKqiFDIVITNVVRHDMDGFEILQIIGV-GMDIPVIMVSANEDLKMMKRGLMEG 117
                     7899*******************.***************888889********************9955.458********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a+ +l Kp+  +el +
  Cucsa.092420.1 118 AELYLPKPVGLQELKN 133
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.7E-3022156No hitNo description
SuperFamilySSF521729.53E-2823151IPR011006CheY-like superfamily
SMARTSM004489.7E-2023135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.71324139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-1825133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.35E-2326139No hitNo description
PROSITE profilePS5129410.465204263IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-21205264IPR009057Homeodomain-like
SuperFamilySSF466896.57E-16205264IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-18207260IPR006447Myb domain, plants
PfamPF002491.9E-7211259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEAFDNPIIP LEAEEDDQFP IGLKVLAIDD DIVCLRYLVQ LLEKCQYKVS ATTRAEEAIR  60
LINDEKQIFD IVITNVVRHD MDGFEILQII GVGMDIPVIM VSANEDLKMM KRGLMEGAEL  120
YLPKPVGLQE LKNIWQLVLR KRLSRKRSNP NLLLLEQPAV EEHRHSLERV TMDQEYYVGD  180
HIVNKLDDDN DNYNNNIVDS SSCSKKKPRI SWTKELHAKF IEAYEILGEK ERVPNNILKH  240
MNDPRLTREN VASHLQKHRD TLRKKKESGV GKLGIQKKLY DKNQTKTSTL YNSMNHMNKV  300
SNLGSQFLIS NGQGNQTWTA ARSCYPVPEF KPFNFPPNNS TSRTCDDDNP YYSGGFDEPI  360
NNSSYYPNSL ETNCGFNSTS QILVGQYAIE NHTDGGAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14204264262ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-138LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-138LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648495.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLA0A0A0LU420.0A0A0A0LU42_CUCSA; Uncharacterized protein
STRINGXP_008453705.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1955035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-53response regulator 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]