PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.092190.1 | ||||||||
Common Name | Csa_1G420320, LOC101214816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 376aa MW: 40992.1 Da PI: 6.1272 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.3 | 2e-05 | 21 | 61 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ ++ +C+ ++ +lC C ++H H+ Cucsa.092190.1 21 KPCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCAnklasrHE 61 57******99********************95545666665 PP | |||||||
2 | zf-B_box | 27.9 | 4.9e-09 | 63 | 108 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Cucsa.092190.1 63 VWMCEVCEQAPAVVMCKADAAALCVTCDADIHSAnplarrHERVPV 108 689*****************************66899999999986 PP | |||||||
3 | CCT | 70.2 | 5.2e-24 | 302 | 345 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Cucsa.092190.1 302 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 345 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-9 | 18 | 65 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.21E-7 | 22 | 65 | No hit | No description |
PROSITE profile | PS50119 | 9.741 | 23 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.936 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-7 | 63 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.68E-9 | 64 | 108 | No hit | No description |
SMART | SM00336 | 8.5E-11 | 66 | 108 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 302 | 344 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.8E-18 | 302 | 344 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MGIDGDSVVK GFGGGWGVVA KPCDSCKTGP AAVYCRPDSA FLCLPCDAKI HCANKLASRH 60 ERVWMCEVCE QAPAVVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDSTESVVK 120 SSSVFNFLVP NETTAPVCDG AHHHEEVEVS SWLLSNSFFN SKLVDGPEIK PPSGDHLFFN 180 EMDSFIDFEY PNPVNNHSAI NDSVVPVQTK PLLTPVINQT HSPENCYDID FCRSKLNSFG 240 YQPQSLSHSV SSSSLEVGVV PEGNSVSDIS YPMGQNVSTG ADSGLPLSGS GNQATQLCGM 300 DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTDMLSE VDEIYGSAAS 360 SVFLTDAQYG VVPTF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656660.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X2 | ||||
Swissprot | Q9FHH8 | 1e-120 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A0A0LUG1 | 0.0 | A0A0A0LUG1_CUCSA; Zinc finger protein | ||||
STRING | XP_004167377.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-103 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.092190.1 |
Entrez Gene | 101214816 |
Publications ? help Back to Top | |||
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