PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.092180.1 | ||||||||
Common Name | Csa_1G420310, LOC101214816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 369aa MW: 40463.5 Da PI: 6.1416 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.1 | 2.7e-06 | 15 | 54 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 r C ++ ++ +C+ ++ +lC +C ++H H Cucsa.092180.1 15 RPCGFCKADPAAVYCRPDSAFLCLSCDAKIHCAnklasrH 54 78****************************9554555556 PP | |||||||
2 | zf-B_box | 27.2 | 7.9e-09 | 56 | 102 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Cucsa.092180.1 56 RVWMCEVCEQAPAVVTCKADAAALCVTCDADIHSAnplasrHERVPV 102 5789*****************************66999999999986 PP | |||||||
3 | CCT | 68.3 | 2e-23 | 293 | 336 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK++rY+sRKa+Ae+RpR+KGrF+k++ Cucsa.092180.1 293 REARVLRYREKRKNRKFEKTVRYASRKAYAETRPRIKGRFAKRT 336 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.599 | 12 | 59 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-9 | 12 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.61E-6 | 15 | 59 | No hit | No description |
PROSITE profile | PS50119 | 10.552 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.7E-7 | 57 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.63E-8 | 58 | 102 | No hit | No description |
SMART | SM00336 | 3.2E-10 | 60 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.4E-17 | 293 | 335 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.708 | 293 | 335 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGIDGATVVN GFRGRPCGFC KADPAAVYCR PDSAFLCLSC DAKIHCANKL ASRHDRVWMC 60 EVCEQAPAVV TCKADAAALC VTCDADIHSA NPLASRHERV PVEPFFDTAE SVVKSSSVLN 120 FLVPDETNVC DGVHHHEEVE VASWLLSNPS FNSKLVHGPE IKTQLGGDHL FFTEMDSFID 180 FEYPNSVNDD HNDIKDSIVP VQTKPDPTPV INHTHSPENC YDIEFCRSKL NSFGYQPQSL 240 SHSVSSSSLD VGVVPQAISM SETSYPMGGQ TGDSGLPLSG SGNQATQLCG MDREARVLRY 300 REKRKNRKFE KTVRYASRKA YAETRPRIKG RFAKRTDMLS EVDEMYGSAA SHVLLTDAQY 360 GLVPTFCP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146297.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X3 | ||||
Swissprot | Q9FHH8 | 1e-108 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A0A0LX41 | 0.0 | A0A0A0LX41_CUCSA; CONSTANS-like zinc finger protein | ||||
STRING | XP_004167376.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-106 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.092180.1 |
Entrez Gene | 101214816 |
Publications ? help Back to Top | |||
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