PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.091230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 130aa MW: 15161.5 Da PI: 10.4091 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.9e-10 | 46 | 82 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e +++a +++G + Wk++a+ m R+ +++ Cucsa.091230.1 46 QWSKEEIESFYEAYRKYGQD-WKKVASSMH-QRSTEMVE 82 6*****************99.*********.99998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0011 | 43 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.88E-12 | 43 | 92 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-7 | 46 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-9 | 46 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.82E-6 | 47 | 89 | No hit | No description |
PROSITE profile | PS50090 | 6.098 | 47 | 86 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MAPPKNLKSL KKRPLRSNDP SAEENYRSSQ TSKKRTKKLS DKLGPQWSKE EIESFYEAYR 60 KYGQDWKKVA SSMHQRSTEM VETLYNMNKA YLSLPEGTAS VVGLIALMTD YYNVMVFKNF 120 RRLIKYKFN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 1e-46 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 1e-46 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011648834.1 | 4e-73 | PREDICTED: protein ALWAYS EARLY 2-like isoform X1 | ||||
Swissprot | Q6A331 | 1e-38 | ALY1_ARATH; Protein ALWAYS EARLY 1 | ||||
TrEMBL | A0A0A0LLU7 | 1e-71 | A0A0A0LLU7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144824.1 | 4e-66 | (Cucumis sativus) | ||||
STRING | XP_004158759.1 | 1e-65 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1783 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 2e-36 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.091230.1 |
Publications ? help Back to Top | |||
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