PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087930.1
Common NameCsa_2G404980
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 312aa    MW: 34823.9 Da    PI: 6.7124
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.88.7e-14245269226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++ G C+yG+ C+FaHg
  Cucsa.087930.1 245 KTELCNKWQEIGDCPYGNHCRFAHG 269
                     9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-16239276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10241275IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817243271IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10245269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8277310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-13277310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629281309IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013281308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEEEMCPPLL PSTLSTTTEL SAVEYEDFGH HFASMYHSIF PPLLSSSSLP NSLSFTPSPS  60
SADDDHNNHC TTPAATSTTD DLLFQARLIL ENRHLHHRHD LCLRRLRQVA EDADYLRQEN  120
AQLRLANAEL VKVISSKTAV DDLVSIPNSH LRTLIGGGQS GDEIGYDMIS PTSVIGKYND  180
QFDGRNNLRR NSLPRSISVR SAAAASSVQL NIKSRGASTP VSDGGSRKRE EEATEFEVYN  240
QGTTKTELCN KWQEIGDCPY GNHCRFAHGL EELRPVMRHP RYKTQMCRMV LAGEKCPYGH  300
RCHFRHSLSE Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-18245310570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138800.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_011649940.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A0A0LQS70.0A0A0A0LQS7_CUCSA; Uncharacterized protein
STRINGXP_004138800.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-46C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]