PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087900.1
Common NameCsa_2G405020, LOC101214064
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 367aa    MW: 40826 Da    PI: 7.5453
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.44.6e-13743651374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL arla  + +++k  ++ +  ++ns e l+++++ ++++P++kf+h
  Cucsa.087900.1   4 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAA-TLTTSKPSSSIPPFPQNSLEILKIYQIVYQACPYVKFAH 97 
                     68****************************************************9.55555555555555677********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s ++++etg+ L+++A++l+vpfef++ + ++le+l+
  Cucsa.087900.1  98 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGSPFLRITGVGP----SIDAVRETGRCLTELAHSLNVPFEFHA-IGEQLESLK 187
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++++ + gEalaVn v +lhr++    sl +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kv
  Cucsa.087900.1 188 PNMFNRRVGEALAVNAVNRLHRVP--GKSLGN----LLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKV 276
                     ***********************9..455555....*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ++++ei+n+vaceg er+erhe+lekWr+ +e+ GFk v+ls++a++q k ll  ++ dgyr+ e++g+l+lgW+dr+L+++SaWr
  Cucsa.087900.1 277 EQYIFAPEIRNIVACEGPERIERHERLEKWRKLMEAKGFKGVALSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWR 365
                     ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.4051345IPR005202Transcription factor GRAS
PfamPF035141.6E-1344365IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
GLQLVHLLLA CAEAVAKEDY MLARRYLHHL NRVVTPIGDS MQRVASCFTE ALTARLAATL  60
TTSKPSSSIP PFPQNSLEIL KIYQIVYQAC PYVKFAHFTA NQAIFEAFEA EERVHVIDLD  120
ILQGYQWPAF MQALAARPGG SPFLRITGVG PSIDAVRETG RCLTELAHSL NVPFEFHAIG  180
EQLESLKPNM FNRRVGEALA VNAVNRLHRV PGKSLGNLLG MIRDQAPNIV TLVEQEASHN  240
GPYFLGRFLE ALHYYSAIFD SLDATFPPDS AQRAKVEQYI FAPEIRNIVA CEGPERIERH  300
ERLEKWRKLM EAKGFKGVAL SSNAVTQSKI LLGLYSCDGY RLTEDKGCLL LGWQDRALIA  360
ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1041136425377Protein SCARECROW
5b3h_D1e-1041136425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441631.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1S3B4L50.0A0A1S3B4L5_CUCME; DELLA protein RGL1-like
STRINGXP_008441631.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-103RGA-like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  5. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]