PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.087250.1 | ||||||||
Common Name | Csa_4G014580, LOC105435339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 67aa MW: 7631.9 Da PI: 11.5129 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.5e-07 | 1 | 37 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++lG g Wk+Ia+++ ++t q+ s+ qky Cucsa.087250.1 1 LFLAGMQLLGQGAWKKIANYVVITKTHTQVASHAQKY 37 6899999***************889***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.334 | 1 | 42 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-9 | 1 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-6 | 1 | 37 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 9.3E-12 | 2 | 41 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.0E-4 | 2 | 37 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
LFLAGMQLLG QGAWKKIANY VVITKTHTQV ASHAQKYFLR QTSPKHKRTT EARIAQHMKR 60 LNNKDQ* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654326.1 | 5e-34 | PREDICTED: myb-like protein J | ||||
TrEMBL | A0A0A0KYZ4 | 1e-32 | A0A0A0KYZ4_CUCSA; Uncharacterized protein | ||||
STRING | XP_008454484.1 | 2e-14 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16777 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 9e-14 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.087250.1 |
Entrez Gene | 105435339 |
Publications ? help Back to Top | |||
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