PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.084230.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 371aa    MW: 42645.7 Da    PI: 4.8894
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.084230.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71.1e-34441362103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++ei++d +++++isws +g+sf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++
  Cucsa.084230.2  44 FLTKTFEIVDDFNTDHVISWSFSGTSFIVWDPHCFSTQLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQKHLLKN 129
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  Cucsa.084230.2 130 IKRRRTT 136
                     ***9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.01E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNPLFPIKEE FPGSSSSDVD GERSAVLTPP VPMEGLHDAG PPPFLTKTFE IVDDFNTDHV  60
ISWSFSGTSF IVWDPHCFST QLLPRFFKHN NFSSFVRQLN TYGFRKIDPD RWEFANEGFI  120
RGQKHLLKNI KRRRTTSYHH HQTLQSQGAS GACVEVGQFG VDAEMDRLKR DKQVLMMELV  180
KLRQEQQNTR AYLQAMEQRL RGTEIKQKQM MNFLARAMKN PSFIQQLIQQ KEKRKELEEA  240
ITKKRRRPIE QAGQHKCGGG SGRRFLGEGS NTIKIEPLEN DEYGFGITEL EALALEMQGL  300
GKTRYEDGEE EEEEDEEDND NLLPSEDEDK VLDEGFWEEL FSERLEEARN EDEHVNVLAD  360
RLGYLGSSPP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-253913612123Heat shock factor protein 1
5d5u_B3e-253913521131Heat shock factor protein 1
5d5v_B3e-253913521131Heat shock factor protein 1
5d5v_D3e-253913521131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKNIKRR
2232246KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146995.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X2
RefseqXP_011659289.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9LUH81e-126HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0A0K5L40.0A0A0A0K5L4_CUCSA; Uncharacterized protein
STRINGXP_004158938.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B