PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.084230.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 375aa    MW: 43147.3 Da    PI: 4.8417
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.084230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34481402103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++ei++d +++++isws +g+sf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++
  Cucsa.084230.1  48 FLTKTFEIVDDFNTDHVISWSFSGTSFIVWDPHCFSTQLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQKHLLKN 133
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  Cucsa.084230.1 134 IKRRRTT 140
                     ***9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3744137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5944137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-3444137IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-184871IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3048137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-188698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLQEMNPLFP IKEEFPGSSS SDVDGERSAV LTPPVPMEGL HDAGPPPFLT KTFEIVDDFN  60
TDHVISWSFS GTSFIVWDPH CFSTQLLPRF FKHNNFSSFV RQLNTYGFRK IDPDRWEFAN  120
EGFIRGQKHL LKNIKRRRTT SYHHHQTLQS QGASGACVEV GQFGVDAEMD RLKRDKQVLM  180
MELVKLRQEQ QNTRAYLQAM EQRLRGTEIK QKQMMNFLAR AMKNPSFIQQ LIQQKEKRKE  240
LEEAITKKRR RPIEQAGQHK CGGGSGRRFL GEGSNTIKIE PLENDEYGFG ITELEALALE  300
MQGLGKTRYE DGEEEEEEDE EDNDNLLPSE DEDKVLDEGF WEELFSERLE EARNEDEHVN  360
VLADRLGYLG SSPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254314012123Heat shock factor protein 1
5d5u_B3e-254313921131Heat shock factor protein 1
5d5v_B3e-254313921131Heat shock factor protein 1
5d5v_D3e-254313921131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136LKNIKRR
2236250KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146995.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X2
SwissprotQ9LUH81e-126HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0A0K5L40.0A0A0A0K5L4_CUCSA; Uncharacterized protein
STRINGXP_004158938.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B