PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.081360.1
Common NameCsa_1G424880, LOC101212164
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-PHD
Protein Properties Length: 715aa    MW: 81095.3 Da    PI: 9.1504
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.081360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.41.8e-11505550954
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++ +e L ++F+ n  ps++ +e L+k+lgL+ ++V+ WF+N R+ 
  Cucsa.081360.1 505 RHAVEKLRKVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYS 550
                     67899***************************************85 PP
2PHD35.62e-12238293151
                     SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C+   +  +++++lCd +C+ +fH+kCl+++l+++++p g   w+C+ C++k
  Cucsa.081360.1 238 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTKSIPPGdqGWFCKFCECK 293
                     699999854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.62E-13229296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.6E-11234293IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.247236293IPR019787Zinc finger, PHD-finger
PfamPF006281.5E-9238293IPR019787Zinc finger, PHD-finger
SMARTSM002491.1E-7238291IPR001965Zinc finger, PHD-type
CDDcd155045.50E-31238290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.244494554IPR001356Homeobox domain
SMARTSM003892.3E-9496558IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-12497548IPR009057Homeodomain-like
SuperFamilySSF466892.01E-10498560IPR009057Homeodomain-like
CDDcd000861.38E-8502555No hitNo description
PfamPF000466.8E-9505550IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRGAGKRLME ESEKCSHSKL ESGSELIFSL KLTRCSKISH SKQKKSRMKS HSQAICSTFK  60
RRPLPKSLSK GNKNVTIRQL AGKKFLLKKL DTKPSKELLL SKLQGEKSLS STNTKGNAEK  120
VEPVVKINQQ RKRKKNKGKK EKVELDEASR LQRRTRYLII KMKLEQNLID AYSGEGWKGQ  180
SREKIRPEKE LQRAMKQILK CKLGIRDAIR QLDLLGSVGC IEDSVIGPDG SVYHEHIFCA  240
KCKLREAFPD NDIILCDGTC NCAFHQKCLD PPLDTKSIPP GDQGWFCKFC ECKMEILEGM  300
NAHLGTRFSL NIGWEDIFKE EAAFPDGGNA LLNHEEDWPS DDSEDDDYDP DKKENCHDNA  360
SEEENDKEVL EESSSSTSLS WSLDGEDLVS GNGIGCEDHF GAGTSIVSDG SNEEGITCGR  420
RQRHAVDYKK LYDEMFGKDT PAHEQEVSED EDWGPAKRRR REKECDAAST LMSLCESEKK  480
SQDIDMEAEK KLLNSHGRSF FRIPRHAVEK LRKVFADNEL PSRDVKENLS KELGLDAEKV  540
SKWFKNARYS ALRTRKAEGA TQPHSSHKTS NELRLADSKE MSKNLLSLEN APIKELQLKL  600
HGSHSKKKQH RKSSHVSSNY NKDAFDFGDD ISLKNLLKKR KTKVKKRVNF VARGEGQAAE  660
LEMERLCKIK GRLETMKQKL LRLSKRKDDG ILDRSHMIEQ SIVYVPVAVL KEKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KKSRMKS
2130134RKRKK
3457462RRRREK
4632640LKNLLKKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146371.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-161PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0A0LUQ10.0A0A0A0LUQ1_CUCSA; Uncharacterized protein
STRINGXP_004146371.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-159pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]