PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.079150.1
Common NameCsa_7G322070, LOC101206511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 571aa    MW: 63861 Da    PI: 4.6005
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.079150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.28e-1322015702374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L ecA a+s+++  +a+a++++l+  +s +gdp qR+aay++e+Laarl++s++ lykal+++e +   ss++laa+++++ev+P++kf+++
  Cucsa.079150.1 201 RQMLSECAFAISEENYGEASAMIEQLRCVVSIQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFM 292
                     6899****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea++ e+++HiiDfd+sqG+Q++ L+q La++p++pp+lR+Tgv++pes+      l+++g+rL+++A++l+vpfef++ +a++ +++
  Cucsa.079150.1 293 AANCAIIEAAKDEKKIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVqrPVGGLRHIGQRLEQLAKALRVPFEFRA-IASNASEV 386
                     *******************************************************99888899***********************.79****** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+ kpgEal+Vn+++ lh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yy+a++dsl+a+lpr+s++ri+
  Cucsa.079150.1 387 TPSMLASKPGEALIVNFAFLLHHMPDESVSTVNQRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRIN 481
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE ++l+++ivn+vaceg+er+er e ++kWr+r+++aGF++ ++s+++++ ++ l++++ ++ +++ ee g+l +gW++++L+++SaWr
  Cucsa.079150.1 482 VESQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKLIEEYCNR-FKMYEEMGTLHFGWEEKSLIVTSAWR 570
                     *************************************************************77.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.567174551IPR005202Transcription factor GRAS
PfamPF035142.8E-129201570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSLVRPSDPS PLSYGSRKLY SLKGTNSAPD LSTQRFGSEK HRTMYMNDTY CSESYEKYFL  60
DFPIEELAIS GISTNSCHPN AWADSLSPLC NSFTPFDACQ SNSDSACLES TSPEELDFED  120
DQVRQKLQEL ERDLLGDPDA ADYDVEMLTN GQSMEIDSEW ANSIQDALLH DSPKESSSTD  180
SNFSTISSNK DASQLSSQNP RQMLSECAFA ISEENYGEAS AMIEQLRCVV SIQGDPSQRI  240
AAYMVEGLAA RLLESGKCLY KALRCKEPPS SDRLAAMQIL FEVCPCFKFG FMAANCAIIE  300
AAKDEKKIHI IDFDVSQGTQ YIKLIQMLAA QPGKPPHLRL TGVDDPESVQ RPVGGLRHIG  360
QRLEQLAKAL RVPFEFRAIA SNASEVTPSM LASKPGEALI VNFAFLLHHM PDESVSTVNQ  420
RDRLLRMVKS LNPKLVTVVE QDMNTNTTPF FSRFVEAYNY YAAVYDSLDA TLPRDSQDRI  480
NVESQCLAKD IVNIVACEGE ERVERYEVAG KWRARMTMAG FTSCSMSQNV TDPIRKLIEE  540
YCNRFKMYEE MGTLHFGWEE KSLIVTSAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6420656925378Protein SCARECROW
5b3h_A4e-6420656924377Protein SCARECROW
5b3h_D4e-6420656924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817940.0LN681794.1 Cucumis melo genomic scaffold, anchoredscaffold00061.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139646.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0A0K4D50.0A0A0A0K4D5_CUCSA; Uncharacterized protein
STRINGXP_004154460.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]