PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.079150.1 | ||||||||
Common Name | Csa_7G322070, LOC101206511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GRAS | ||||||||
Protein Properties | Length: 571aa MW: 63861 Da PI: 4.6005 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 431.2 | 8e-132 | 201 | 570 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ L ecA a+s+++ +a+a++++l+ +s +gdp qR+aay++e+Laarl++s++ lykal+++e + ss++laa+++++ev+P++kf+++ Cucsa.079150.1 201 RQMLSECAFAISEENYGEASAMIEQLRCVVSIQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFM 292 6899****************************************************************9...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN aI ea++ e+++HiiDfd+sqG+Q++ L+q La++p++pp+lR+Tgv++pes+ l+++g+rL+++A++l+vpfef++ +a++ +++ Cucsa.079150.1 293 AANCAIIEAAKDEKKIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVqrPVGGLRHIGQRLEQLAKALRVPFEFRA-IASNASEV 386 *******************************************************99888899***********************.79****** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++L+ kpgEal+Vn+++ lh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yy+a++dsl+a+lpr+s++ri+ Cucsa.079150.1 387 TPSMLASKPGEALIVNFAFLLHHMPDESVSTVNQRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRIN 481 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vE ++l+++ivn+vaceg+er+er e ++kWr+r+++aGF++ ++s+++++ ++ l++++ ++ +++ ee g+l +gW++++L+++SaWr Cucsa.079150.1 482 VESQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKLIEEYCNR-FKMYEEMGTLHFGWEEKSLIVTSAWR 570 *************************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.567 | 174 | 551 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-129 | 201 | 570 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MSLVRPSDPS PLSYGSRKLY SLKGTNSAPD LSTQRFGSEK HRTMYMNDTY CSESYEKYFL 60 DFPIEELAIS GISTNSCHPN AWADSLSPLC NSFTPFDACQ SNSDSACLES TSPEELDFED 120 DQVRQKLQEL ERDLLGDPDA ADYDVEMLTN GQSMEIDSEW ANSIQDALLH DSPKESSSTD 180 SNFSTISSNK DASQLSSQNP RQMLSECAFA ISEENYGEAS AMIEQLRCVV SIQGDPSQRI 240 AAYMVEGLAA RLLESGKCLY KALRCKEPPS SDRLAAMQIL FEVCPCFKFG FMAANCAIIE 300 AAKDEKKIHI IDFDVSQGTQ YIKLIQMLAA QPGKPPHLRL TGVDDPESVQ RPVGGLRHIG 360 QRLEQLAKAL RVPFEFRAIA SNASEVTPSM LASKPGEALI VNFAFLLHHM PDESVSTVNQ 420 RDRLLRMVKS LNPKLVTVVE QDMNTNTTPF FSRFVEAYNY YAAVYDSLDA TLPRDSQDRI 480 NVESQCLAKD IVNIVACEGE ERVERYEVAG KWRARMTMAG FTSCSMSQNV TDPIRKLIEE 540 YCNRFKMYEE MGTLHFGWEE KSLIVTSAWR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-64 | 206 | 569 | 25 | 378 | Protein SCARECROW |
5b3h_A | 4e-64 | 206 | 569 | 24 | 377 | Protein SCARECROW |
5b3h_D | 4e-64 | 206 | 569 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681794 | 0.0 | LN681794.1 Cucumis melo genomic scaffold, anchoredscaffold00061. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139646.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A0A0K4D5 | 0.0 | A0A0A0K4D5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004154460.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4988 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.079150.1 |
Entrez Gene | 101206511 |
Publications ? help Back to Top | |||
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