PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.076020.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 537aa    MW: 55133.9 Da    PI: 7.5832
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.076020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.24.9e-411282682114
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++       
  Cucsa.076020.1 128 AANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISIRSSGSTLSAPpsksaph 222
                     679******************************************************************88865555555555444334445556 PP

             TCP  89 ....................kaaksaakskksqksaasalnlakes 114
                                         ++a+    ++++q++++++lnl+   
  Cucsa.076020.1 223 sfhgaalalahhphayeegfAHAALLGFHHQQQQQQQHHLNLMTAD 268
                     6666667777777777766633333333344444444456666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-40133263IPR005333Transcription factor, TCP
PROSITE profilePS5136928.442134188IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MELTDMQQQS NKQQQQQQQH HHHHHLHHQN QTQKLGSSQS QSQSQSQSPS PSPSHGHPFD  60
ARSPPSSAGG GGGGAGGAGG GGHPTFMAST SASSAATHHL DASLVIATRS DTTAAADPSP  120
RSTSTANAAN KRSTKDRHTK VEGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ  180
AEPAIIAATG TGTIPANFSS LNISIRSSGS TLSAPPSKSA PHSFHGAALA LAHHPHAYEE  240
GFAHAALLGF HHQQQQQQQH HLNLMTADQI GEGLPSGGGE STDNYMRKRF REDLFKEDTQ  300
SPGESSGGGG SPKAMKTDLQ LEKQQQQPSA SSSGLLRPGA AMWAVAAPGP SSGASNTFWM  360
LPVTAGSGGG NVGNSSGGGG GGGGGGGGGL EAHQMWPFST SGNTLQAPLH LMPRFNIPGG  420
VEIQAAAAAA AAAAAAGGGR GGGGQLQLGS MLMQQAAGGG GGGLGVSETN LGMLAALNAA  480
YNSRSGSGFN INSDNHPLEH QQHQHQHHHH HHHHHNPAHN TNTDHNSGDE APNTSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437443GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655544.10.0PREDICTED: transcription factor TCP8
TrEMBLA0A0A0KPT30.0A0A0A0KPT3_CUCSA; Uncharacterized protein
STRINGXP_004173314.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-49TCP family protein