PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.074350.1

Common Name

Csa_3G098560, LOC101208986

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 436aa MW: 46833.5 Da PI: 9.7581

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.074350.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	201	223	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ + H + H Cucsa.074350.1 201 TCHKCGEQFNKWDAAEAHHLSkH 223 7*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	202	223	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.07E-22	225	434	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.4E-9	229	411	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MPTVWLSLKK SLHCKSEPSD VHDPKSKKNL GAILTRKTGG GGRSGCSRSI ANLKDVINGG 60 SKRHLDKPPS CSPRSIGSSE FLNPITHEVI LSNSKCELKI TGFHGGFPQD LPPADTHGGT 120 STFVGTLTPG TPGPGGHPSM HYFNPSLRSS SKKFSFREGF GSSNKSGGGA GGGARGTGIH 180 LSNRISLETE NSRNGCSSAV TCHKCGEQFN KWDAAEAHHL SKHAVTELVE GDSSRKIVEI 240 ICRTSWLKSE NQSGRIERVL KVHNMQRTLA RFEEYRETVK IKASKLPKKH PRCLADGNEL 300 LRFYGTTVGC LLGLNGSSSL CISEKCCVCR IIRNGFSAKT EMEEGIGVFT TSTSARAFSS 360 IKGSGGDEGM TRKAMIVCRV IAGRVHRPLE NIQEMAGQTG FDSLAGKVGL HSNIEELYLL 420 NPRALLPCFV VICKP*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MPTVWLSLKK SLHCKSEPSD VHDPKSKKNL GAILTRKTGG GGRSGCSRSI ANLKDVINGG  60
SKRHLDKPPS CSPRSIGSSE FLNPITHEVI LSNSKCELKI TGFHGGFPQD LPPADTHGGT  120
STFVGTLTPG TPGPGGHPSM HYFNPSLRSS SKKFSFREGF GSSNKSGGGA GGGARGTGIH  180
LSNRISLETE NSRNGCSSAV TCHKCGEQFN KWDAAEAHHL SKHAVTELVE GDSSRKIVEI  240
ICRTSWLKSE NQSGRIERVL KVHNMQRTLA RFEEYRETVK IKASKLPKKH PRCLADGNEL  300
LRFYGTTVGC LLGLNGSSSL CISEKCCVCR IIRNGFSAKT EMEEGIGVFT TSTSARAFSS  360
IKGSGGDEGM TRKAMIVCRV IAGRVHRPLE NIQEMAGQTG FDSLAGKVGL HSNIEELYLL  420
NPRALLPCFV VICKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681858	0.0	LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149303.1	0.0	PREDICTED: uncharacterized protein LOC101208986
TrEMBL	A0A0A0L585	0.0	A0A0A0L585_CUCSA; Uncharacterized protein
STRING	XP_004167219.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4983	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-117	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.074350.1
Entrez Gene	101208986

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]