PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.072900.1
Common NameCsa_2G423550, LOC101206817
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 397aa    MW: 43903.9 Da    PI: 5.541
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.072900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-05234335
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                    e+ C+ ++  ++  +C++++  lC +C    H+
  Cucsa.072900.1  2 EPLCEFCGVVRAVVYCKSDSARLCLQCDGRVHS 34
                    689******99****************988884 PP
2zf-B_box19.61.9e-064772530
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedCl 30
                     C++++ ++++  C d++  lC++C 
  Cucsa.072900.1 47 LCDNCNAQPAIVRCMDDKLSLCQSCD 72
                    7************************7 PP
3CCT62.81e-21340383144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  Cucsa.072900.1 340 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 383
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.8E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501198.617147IPR000315B-box-type zinc finger
CDDcd000212.73E-4335No hitNo description
PfamPF062031.1E-16340382IPR010402CCT domain
PROSITE profilePS5101714.684340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEPLCEFCGV VRAVVYCKSD SARLCLQCDG RVHSANSLSR RHLRSLLCDN CNAQPAIVRC  60
MDDKLSLCQS CDWNNNPNSH PNPSPNAPPP SHILHSYSGC PSMPDFFRFW SSDPSSLPPP  120
HSWFPPPPPP HFPFSTTPFH LSDPHSKGCS DFKDVTTTTT AADATHDHDD LCEALNLDDV  180
SLHLDNNEDE LFGCPQGTTI KCQFEDGELD SLLMEKNFFE VTDSNAPPPP PLDNTIEDIS  240
SVQQDFIGFQ SSQEGVSINM IQNGNSNCML MNPSCNGNIN IGFPPTAQVH SSISLSLSNM  300
TGESSVADYQ DCGLSPAFLT EASWDPSMEG IGPQAKDRNR DKAKMRYNEK KKTRTFGKQI  360
RYASRKARAD TRKRVKGRFV KAGEAYDYDP LVTRNF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819161e-180LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132651e-180LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151929.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
RefseqXP_011650020.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A0A0LMY70.0A0A0A0LMY7_CUCSA; Uncharacterized protein
STRINGXP_004151929.10.0(Cucumis sativus)
STRINGXP_004172621.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-55CONSTANS-like 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]