PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.072780.1
Common NameCsa_2G419960, LOC101214763
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 758aa    MW: 82885.8 Da    PI: 5.8463
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.072780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2093149157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Cucsa.072780.1  93 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 149
                     688999************************************************995 PP
2START225.61.5e-702845041206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el ++a+ +ep+W++       ++n+de+l++f+++ +     ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+tl
  Cucsa.072780.1 284 ELAVAAMEELTRMAQMGEPLWMTTLdgstHMLNEDEYLRTFPRGIGpkpsgFKCEASRESAVVIMNHINLVEILMDVN-QWSTLFSgivsRAMTL 377
                     57899***********************9**************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m++e+q++splvp R++++vRy++q+g+g+wv+vdvS+d  ++ p    +vR++++pSg+li++++ng+skvtwvehv
  Cucsa.072780.1 378 EVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYYVRYCKQHGDGTWVVVDVSLDDLRPTP----GVRCRRRPSGCLIQEMPNGYSKVTWVEHV 468
                     ************************************************************99....6**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv+sg+a+gak+wv tl+rqce+
  Cucsa.072780.1 469 EVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCER 504
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-2273148IPR009057Homeodomain-like
SuperFamilySSF466897.94E-2080150IPR009057Homeodomain-like
PROSITE profilePS5007117.05490150IPR001356Homeobox domain
SMARTSM003892.4E-2091154IPR001356Homeobox domain
CDDcd000861.38E-1993151No hitNo description
PfamPF000464.1E-1893148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084845.823275507IPR002913START domain
SuperFamilySSF559611.92E-38275506No hitNo description
CDDcd088752.08E-129279503No hitNo description
SMARTSM002341.1E-67284504IPR002913START domain
PfamPF018525.5E-60285504IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-7380473IPR023393START-like domain
SuperFamilySSF559618.93E-26523749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPAGIMTPAR NMGSMIGRNG NNDVAGFSSP SGLPFSQPSI MDAHLLPLDI PQNTSESDLA  60
RIRDDDFDSA TKSGSDNNHE LVSGDDQDPR PKKKRYHRHT QHQIQEMEAF FKECPHPDDK  120
QRKELSRELG LEPLQVKFWF QNKRTQMKNQ HERHENTQLR TENEKLRADN MRYREALSNA  180
SCPNCGGPTA IGEMSFDEHH LRLENARLRE EIDRISAIAA KYVGKPVVNY PLLSPSVPSR  240
PLELGMANFG PQPGLGGGDI YGSASDLIRS ISAPTEADKP MIIELAVAAM EELTRMAQMG  300
EPLWMTTLDG STHMLNEDEY LRTFPRGIGP KPSGFKCEAS RESAVVIMNH INLVEILMDV  360
NQWSTLFSGI VSRAMTLEVL STGVAGNYNG ALQVMTSEFQ VPSPLVPTRE SYYVRYCKQH  420
GDGTWVVVDV SLDDLRPTPG VRCRRRPSGC LIQEMPNGYS KVTWVEHVEV DDRGVHNLYK  480
QLVSSGQAFG AKRWVTTLDR QCERLASAMA TNIPTGDVGV ITNQEGRKSM LKLAERMVIS  540
FCAGVSASTT HTWTTLSGTG ADDVRVMTRK SIDDPGRPHG IVLSAATSFW LPVPPKRIFD  600
FLRDENSRSE WDILSNGGVV QEMAHIANGR DTGNCVSLLR VNSANSSQSN MLILQESCTD  660
PTASFVIYAP VDVVAMNLVL NGGDPDYVAL LPSGFAILPD GGGGEGVSGG SLLTVAFQIL  720
VDSVPTAKLS LGSVATVNNL IACTVERIKA SLSCENA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819160.0LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650011.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S3C1V00.0A0A1S3C1V0_CUCME; homeobox-leucine zipper protein HDG2-like isoform X1
STRINGXP_008455850.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]