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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cucsa.069440.2 | ||||||||
| Common Name | Csa_6G312560, LOC101210138 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 644aa MW: 71189.7 Da PI: 5.6906 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 84.6 | 1e-26 | 190 | 243 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ Y+l
Cucsa.069440.2 190 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQVYKL 243
79*******************.*******************************87 PP
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| 2 | Response_reg | 72.3 | 1.9e-24 | 12 | 120 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ +++l+++l++ y v+ + +e al +l+e++ +D++l D+ mp+mdG++ll++ e +lp+i+++a + ++ + + + G
Cucsa.069440.2 12 VLVVDDDPTCLKILEKMLQNCCY-AVTKCNRAEIALSMLRENKngFDIVLSDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDGKNVVMKGVIHG 104
89*********************.***************999999**********************6644.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l++
Cucsa.069440.2 105 ACDYLIKPVRIEALRN 120
*************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 2.7E-162 | 1 | 633 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 7.2E-41 | 9 | 153 | No hit | No description |
| SuperFamily | SSF52172 | 2.85E-34 | 9 | 134 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 4.2E-27 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.317 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 7.3E-22 | 12 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.83E-25 | 13 | 125 | No hit | No description |
| SuperFamily | SSF46689 | 3.58E-18 | 187 | 246 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 12.254 | 187 | 246 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 189 | 246 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.1E-23 | 190 | 244 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 3.6E-7 | 192 | 242 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 644 aa Download sequence Send to blast |
MSSDQFPAGL RVLVVDDDPT CLKILEKMLQ NCCYAVTKCN RAEIALSMLR ENKNGFDIVL 60 SDVHMPDMDG FKLLEQVGLE MDLPVIMMSA DDGKNVVMKG VIHGACDYLI KPVRIEALRN 120 LWQHVVRKRK TEWKDLEQSG SVDEGDREQN LSEGANYSSS AYEGSWNSSK RRRDAEEEPE 180 ERDDTSTLKK PRVVWSVELH QQFVAAVNQL GIDKAVPKKI LELMNVPGLT RENVASHLQV 240 YKLRLSGVSP HQSNLNNSFI NPQDPPFGSM GSFNGIDLQT LSVTGQLSPQ SLAALQATGL 300 RRPTAKSGIS MALDQNNIFS FENPKLRFVE DQTQHLNNSK PVNLFHGIPT KMEPKQLANI 360 QHPSVQPQGN INMQLNIKSE HGGTQLMHLS QQQTIGQTLG NSPASHLPRI SSTLRKPIIS 420 GSVMRGNGTA DNSHRPGYNL VSPTSVMVNY PMSQTTELSN NYSLQSNSSV STLNCKGMFQ 480 EEISSDLKVS GGLMSSYDVF SDLPLQKSHD WDSQNVSTLA FGTFHHGNFI QDSFDISSST 540 LIHHGFPSSQ TNGQNQNSSV VGKTVFSFSD STQPENPQNI FQNSLLDPVE VKSQRIPDAN 600 YQTDLLSEDF GQDELLGVFI KQQQQGDNGS VDFSGYQTEN ICV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 2e-20 | 189 | 249 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | LN681924 | 0.0 | LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047. | |||
| GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004150083.1 | 0.0 | PREDICTED: two-component response regulator ARR2 isoform X1 | ||||
| Swissprot | Q9ZWJ9 | 1e-169 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A0A0KF03 | 0.0 | A0A0A0KF03_CUCSA; Two-component response regulator | ||||
| STRING | XP_004161384.1 | 0.0 | (Cucumis sativus) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 1e-161 | response regulator 2 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Cucsa.069440.2 |
| Entrez Gene | 101210138 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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