PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.067080.1 | ||||||||
Common Name | Csa_4G308500, LOC101209227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 34358.4 Da PI: 6.8073 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+eE +++ +a +++ + +W ++a++++ g+t +++ +q Cucsa.067080.1 24 QWTPEENKRFENALALYDEDtsdRWFKVAAMIP-GKTIGDVIKQYQE 69 6********************************.*********9996 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8e-15 | 133 | 177 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Cucsa.067080.1 133 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-4 | 18 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 6.36 | 20 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-8 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.14E-11 | 23 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-8 | 24 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.01E-7 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 20.282 | 126 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.0E-17 | 128 | 181 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-17 | 129 | 181 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.9E-12 | 130 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-13 | 131 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.63E-11 | 133 | 178 | No hit | No description |
Pfam | PF00249 | 3.5E-12 | 133 | 177 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEFLSPASYL RNSNWLFQET KGTQWTPEEN KRFENALALY DEDTSDRWFK VAAMIPGKTI 60 GDVIKQYQEL EEDVSDIEAG LIPIRGYANR HSFTLERVDS SHGFDGLSHF YGSGVKRGTS 120 TRPSDHERKK GIPWTEEEHR QFLMGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR 180 QLSGGKDKRR SSIHDITTVN LPDMKSPLGD SNRPPSPDPA AMATHLHQLS KMVDSTDQQF 240 DWESLNQVLD SSNGNMFMVM PSNGTQQQEQ NLLKETIIES PIAPYYTIFQ MQPMHQHYH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-13 | 22 | 87 | 8 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681888 | 0.0 | LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147889.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-104 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0A0KXH8 | 0.0 | A0A0A0KXH8_CUCSA; DNA binding protein | ||||
STRING | XP_004162748.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-113 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.067080.1 |
Entrez Gene | 101209227 |
Publications ? help Back to Top | |||
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