PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.065330.1

Common Name

Csa_4G290190, LOC101213195

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 674aa MW: 76073 Da PI: 10.0619

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.065330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.8e-09	10	64	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +rW t E++ll+ av+++G+ +W+++a ++ +t+ +c++++++++ Cucsa.065330.1 10 KRWGTLEELLLASAVNRHGTASWESVAMEIHnrcshqssSSLTPQDCRNKFYDLK 64 59***********************************999*******9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.586	4	64	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.54E-5	7	68	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-6	8	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-6	8	66	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-8	10	64	IPR001005	SANT/Myb domain
CDD	cd00167	9.60E-5	11	64	No hit	No description
Gene3D	G3DSA:1.20.920.10	9.0E-14	296	426	IPR001487	Bromodomain
SuperFamily	SSF47370	4.19E-17	301	427	IPR001487	Bromodomain
SMART	SM00297	4.5E-14	315	424	IPR001487	Bromodomain
CDD	cd04369	7.22E-14	326	419	No hit	No description
Pfam	PF00439	4.9E-10	327	404	IPR001487	Bromodomain
PROSITE profile	PS50014	10.981	334	405	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MVKQRETNAK RWGTLEELLL ASAVNRHGTA SWESVAMEIH NRCSHQSSSS LTPQDCRNKF 60 YDLKRRFLSQ NVLDSDSDPT TLMPMLDELR KIRVQELRRD VERRDVLIVS LEMKVKRLEE 120 ERDRSSNQSP EGSDLDTDKA KTNLHLQNPA ASGDDSDDRE NRSLNESNST SKKDDVRQNG 180 VVEDNPIIES VNMSKMEETG PPKTGDEPGR EWSFESAGQE PEPEPDPEAK PEREKKSSGG 240 YKRREKERNW GNLKAAVVDS NEAWESVSES KQDGKEGAVS KQQSSDVQSS GSLSQRKRCR 300 NSSGEEPEVS PAKPKPKALA VKTEPLLKLL DIIRSHQLGS TFERRLRSQE SDRYKNLIRQ 360 HIDLRTIRCR VVKGAYADSI HRFFRDLLLL FNNAIIFFHR SSPENGAALK LRALVLKDMK 420 DHIDKPQPIV LKSKPKQETD LSLPSSKPTT KPSTTTIVGC RKRDSVATDC KKVDKNSRDI 480 EVKPKVSDSS EIKIYEKGTW KKGLNSKERL RPTSTPTPAN SGQRSSRTSS TSKNNGEVKH 540 EYGGNELSSH DGMEVRMEKK ERVTKKKQGA VSFLKRMKQN SPNEAAEEDG DASENECIKE 600 EEEEEEEEEG KRKVKRQKEG KRERVRRSGG GGGGGGRGKK AVGRPPKKTE TVTVKRQQRE 660 EVSNSKPQKR SRR*

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MVKQRETNAK RWGTLEELLL ASAVNRHGTA SWESVAMEIH NRCSHQSSSS LTPQDCRNKF  60
YDLKRRFLSQ NVLDSDSDPT TLMPMLDELR KIRVQELRRD VERRDVLIVS LEMKVKRLEE  120
ERDRSSNQSP EGSDLDTDKA KTNLHLQNPA ASGDDSDDRE NRSLNESNST SKKDDVRQNG  180
VVEDNPIIES VNMSKMEETG PPKTGDEPGR EWSFESAGQE PEPEPDPEAK PEREKKSSGG  240
YKRREKERNW GNLKAAVVDS NEAWESVSES KQDGKEGAVS KQQSSDVQSS GSLSQRKRCR  300
NSSGEEPEVS PAKPKPKALA VKTEPLLKLL DIIRSHQLGS TFERRLRSQE SDRYKNLIRQ  360
HIDLRTIRCR VVKGAYADSI HRFFRDLLLL FNNAIIFFHR SSPENGAALK LRALVLKDMK  420
DHIDKPQPIV LKSKPKQETD LSLPSSKPTT KPSTTTIVGC RKRDSVATDC KKVDKNSRDI  480
EVKPKVSDSS EIKIYEKGTW KKGLNSKERL RPTSTPTPAN SGQRSSRTSS TSKNNGEVKH  540
EYGGNELSSH DGMEVRMEKK ERVTKKKQGA VSFLKRMKQN SPNEAAEEDG DASENECIKE  600
EEEEEEEEEG KRKVKRQKEG KRERVRRSGG GGGGGGRGKK AVGRPPKKTE TVTVKRQQRE  660
EVSNSKPQKR SRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142229.1	0.0	PREDICTED: bromodomain-containing protein DDB_G0270170 isoform X1
TrEMBL	A0A0A0L0M6	0.0	A0A0A0L0M6_CUCSA; Uncharacterized protein
STRING	XP_004142229.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1870	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	2e-28	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.065330.1
Entrez Gene	101213195

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]