PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.061970.1 | ||||||||
Common Name | Gl-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 645aa MW: 72982.3 Da PI: 6.4094 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68 | 1.2e-21 | 109 | 164 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k Cucsa.061970.1 109 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIK 164 7999************************************************9877 PP | |||||||
2 | START | 213.9 | 5.6e-67 | 284 | 510 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ea +el ++a+a++p+Wv+s+ e++n+de+l++f+ s++ ++ea+r++++v+m++ +lv++++d + qW+e+++ ka+t Cucsa.061970.1 284 DEAVEELKTMAAAGDPLWVRSVetgrEILNYDEYLKTFQFSNNnsntrnclkTHIEASRETALVFMEPSRLVQSFMDEN-QWKEMFPfmisKAAT 377 578999********************************9888899**********************************.*************** PP EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 ++vi++g ga+qlm+ae q+l+plvp R+ +f+R+++ql a++w+ivdvS+++ ++++ + s+v+ +++pSg++i+++sngh+kvt+ve Cucsa.061970.1 378 VDVICNGeaakwnnGAVQLMFAEVQMLTPLVPtREMYFIRHCKQLDAEQWAIVDVSIENVEDNNIDVSLVKYRKRPSGCIIKDESNGHCKVTMVE 472 ***************************************************************99****************************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h ++ ++ +h+l+rs+v++g+a+ga++w+atlq qce+ Cucsa.061970.1 473 HLECVKNKVHNLYRSIVNNGTAFGARHWMATLQLQCER 510 ************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-21 | 99 | 167 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 104 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 106 | 166 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-19 | 108 | 170 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.6E-19 | 109 | 164 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.70E-18 | 109 | 164 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 141 | 164 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 33.915 | 272 | 513 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.85E-31 | 275 | 510 | No hit | No description |
CDD | cd08875 | 1.21E-102 | 277 | 509 | No hit | No description |
SMART | SM00234 | 1.5E-58 | 280 | 510 | IPR002913 | START domain |
Pfam | PF01852 | 5.5E-54 | 284 | 510 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.02E-7 | 554 | 629 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MSNNNNTNNP LAFTKDFFSS PALSLTLAGI FRRSDHEVGD VEMEEVDDGS VGGARRDNHD 60 TMTAEVSSEN SGPVVRSRSE EEEEEEEEGG GQDDQENELV DHGCQLKRRK KYHRHTTEQI 120 REMEALFKES PHPDEKQRQQ LSKRLGLSPR QVKFWFQNRR TQIKAIQERH ENTLLKAEME 180 KLREENKAMR EISKKKIGCP NCGTADATQD DLVFTTTEQL RIKNAKLKAE VEKLRAALGK 240 YPQAAASPST YSSGNEQETS NRICLDFYTG IFGLENSRIM EKVDEAVEEL KTMAAAGDPL 300 WVRSVETGRE ILNYDEYLKT FQFSNNNSNT RNCLKTHIEA SRETALVFME PSRLVQSFMD 360 ENQWKEMFPF MISKAATVDV ICNGEAAKWN NGAVQLMFAE VQMLTPLVPT REMYFIRHCK 420 QLDAEQWAIV DVSIENVEDN NIDVSLVKYR KRPSGCIIKD ESNGHCKVTM VEHLECVKNK 480 VHNLYRSIVN NGTAFGARHW MATLQLQCER SAFFMATNIP MKDSTGVSTL AGRKSTLKLA 540 QRMSCSFSQA VAASSYQTWT KVVGKSGEDI RVCSRKNLSD PGEPIGVILC AVSSLWLPLS 600 PHLLFDFFRD ESRRSQWDAM FGGDKAKTIA NLAKGQDRGN SVTIQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM095653 | 0.0 | KM095653.1 Cucumis sativus multicellular trichome development class IV homeodomain-leucine zipper transcription factor (Gl-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447518.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2-like isoform X1 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A097A1M3 | 0.0 | A0A097A1M3_CUCSA; Multicellular trichome development class IV homeodomain-leucine zipper transcription factor | ||||
STRING | XP_004151038.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4714 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.061970.1 |
Publications ? help Back to Top | |||
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