PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.061590.1
Common NameCsa_5G652220, LOC101209773
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 245aa    MW: 26807.1 Da    PI: 5.7482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.061590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13180225655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+e++P+     +k  + a++Le+AveY+k Lq
  Cucsa.061590.1 180 SIAERVRRTRISDRIRKLQEVVPNM----DKQTNTADMLEEAVEYVKFLQ 225
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.634174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-16177241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-12178229No hitNo description
Gene3DG3DSA:4.10.280.103.0E-16179238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10180225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-13180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQSTTGAAST ATATASSRTS AGGAGLARFR SAPAAWLEAL LEDDEEDPLK PNPCLTQLLA  60
ANSSDLDSAP ADHPLFDPNP SPAFHRQNSS PPEFLAPSGI AEGFYTSYPL NSSPTLDISP  120
TSKPSTDVDA QNFFPKFSPQ LKREGSGVSS LIDMEMEKLL EDSVPCRVRA KRGCATHPRS  180
IAERVRRTRI SDRIRKLQEV VPNMDKQTNT ADMLEEAVEY VKFLQKQIQE LTEHQRRCKC  240
MVKE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141566.10.0PREDICTED: transcription factor bHLH81 isoform X1
SwissprotQ9C8P84e-82BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0A0KY011e-180A0A0A0KY01_CUCSA; Uncharacterized protein
STRINGXP_004168264.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.19e-64bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]