PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.058440.1 | ||||||||
Common Name | Csa_4G618450, LOC101220527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | FAR1 | ||||||||
Protein Properties | Length: 760aa MW: 87822 Da PI: 8.2459 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.8 | 2.1e-24 | 93 | 179 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e++++ ++r+ +tgC+a++++kk++dgkw v+ + eHnHe++p Cucsa.058440.1 93 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESTTT----VNPRPCMKTGCNASMHIKKREDGKWFVHGFTREHNHEICP 179 5****************************************998877....9************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.1E-22 | 93 | 179 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.6E-23 | 261 | 354 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.062 | 541 | 577 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.4E-6 | 543 | 574 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.9E-7 | 552 | 579 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MDIDLELPSS DHERLDVIQG RNDGVNVCQA NGQGKYANSF ARAEHHEEMS IPNAKKSSGE 60 DRMDIINFET DFRIGPFEPK NGLEFESKEE AYSFYREYAR SVGFGITIKA SRRSKKSGKF 120 IDIKIACSRF GSKRESTTTV NPRPCMKTGC NASMHIKKRE DGKWFVHGFT REHNHEICPD 180 DFHHAMKGRN KKPDIAISEK KGLQLALDEG DVLLMLEHFV HMQETNPNFF YAIHFNQEKQ 240 LRNVLWVDAK ARHDYQNFSD VIFFDTYYLT NGYKVPFVPI VGVNHHFQYI LFGGALIGDM 300 ATSSFIWLMK TWLKAVGGRA PRVVLTDQEL SLKESVSDVF PNTLHLFSLW HILRRVPEKL 360 GRTINQNGGF IETLNKCIYR SWTDKEFEKR WWEMIDKFQI REDEWLQLLF DDRKKWVPTY 420 VKNYFLAGMS TLERSGSVIS FFDKYICKET SFKEFIKHSK IFFKDMLELE ANADFETRHQ 480 KPILKSLFTF EKQMATMYTT TMFKKFQLQI LGAASCQVHK QTENGATVTY HIHDLEEHQD 540 FLVAWNKTEM DICCLCRSFE YQGILCRHAI LVFQILGLTS IPHKYILKRW TRSAKVRISE 600 SSNRLHYRVQ RFNNLCKQAI KLGELGSLSQ ETYDIASEAF DEVLKQCAFA KNSTKSFVEI 660 NTLGSVGFVD DEENHGEYMA KSSGKRQMSK KGKVIKQARY KSSEVVLQGQ SNTNSRFCDG 720 PEDYYSHQAM HNLDYSPSVV AHVGPCSDGQ TMQSQGQLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681864 | 0.0 | LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145997.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 2 | ||||
Refseq | XP_011654002.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 2 | ||||
Swissprot | Q3EBQ3 | 0.0 | FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A0A0KZ94 | 0.0 | A0A0A0KZ94_CUCSA; Uncharacterized protein | ||||
STRING | XP_008464680.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.3 | 0.0 | FAR1-related sequence 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.058440.1 |
Entrez Gene | 101220527 |
Publications ? help Back to Top | |||
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