PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.058070.1 | ||||||||
Common Name | Csa_4G622780, LOC101219900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | STAT | ||||||||
Protein Properties | Length: 711aa MW: 79518.4 Da PI: 5.4213 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 199 | 4.4e-62 | 223 | 343 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldv+ll++ gqpv k++evvasL+yadsg++veks+d+eapLL+sydGvef+s+drp+kll+GrasfklkisqLsskcdn+Lfri+f+ip++++y Cucsa.058070.1 223 LDVMLLDSSGQPVLKELEVVASLIYADSGEAVEKSGDEEAPLLASYDGVEFASSDRPSKLLHGRASFKLKISQLSSKCDNKLFRIRFCIPRVEAY 317 8********************************************************************************************** PP STAT 96 pfleavskpirCisrsrntrsssltk 121 pf+ea+s+pirCisrsrntr+s+l+ Cucsa.058070.1 318 PFFEALSSPIRCISRSRNTRMSTLML 343 ********************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 1.08E-8 | 21 | 170 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:2.60.120.200 | 1.3E-5 | 27 | 156 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 3.72E-55 | 601 | 710 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 3.4E-7 | 605 | 695 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 4.68E-8 | 609 | 674 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.938 | 612 | 694 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MGSEVNESDE YSLLKNLRLE FDGDDGCFTV CFWVYLMNST TFPVSILQQV QLDSSSMTPF 60 LILSEWNRLK IMPLTTLHKA DEGSSPGSSS SANVVPHEYL DVDFPMEKWV HIGCEVSTDF 120 VRLHIDGKMV GEKPVSSSLS EDTFPRALGT IVLGNNGEDI SLQGYIHNEK VLPSASLIRD 180 HYAEDLPVKL FIDNSSTMEI EEGGDGIWNI VGGKPSCRRN FSLDVMLLDS SGQPVLKELE 240 VVASLIYADS GEAVEKSGDE EAPLLASYDG VEFASSDRPS KLLHGRASFK LKISQLSSKC 300 DNKLFRIRFC IPRVEAYPFF EALSSPIRCI SRSRNTRMST LMLKRSTFHP LDVSRSSGLD 360 NGTSEHEHVS VEEEKPSPLL KRVKLGQDRP TPIDDPSSGQ PDEECNSHSF TANGAGNGFG 420 SRTERSKNNG STGASPSDSG STEARHSVLN RTRTNGNPIS DVNIFKYCLG GLSERSLLLK 480 EIATSVSQEE ILEFAEHVSL YSGCLHHRHQ ILMSRKLIEE GTRAWNSISQ NKHHVHWENV 540 VFEIEEQFMR ISGCSSRSLT QQDFELLRRI SGCQEYLAQE NFERMWCWLY PVAFTLSRQW 600 INAMWSSLSP KWIEGFITKE EAELSLQSPA GLQDPGTFIL RFPTSRSWPH PDAGSLVVTY 660 VGNDYALHHR LLTLDRIFSS TEGEKNMRSL QDMLLAEPEL SRLGRTIRSH * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146076.2 | 0.0 | PREDICTED: uncharacterized protein LOC101219900 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A0A0L1Y6 | 0.0 | A0A0A0L1Y6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004162113.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6710 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.058070.1 |
Entrez Gene | 101219900 |
Publications ? help Back to Top | |||
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