PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.055340.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 472aa    MW: 53151 Da    PI: 6.2451
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.055340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS466.12e-142464681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+ g+l  a+ +L ++s+laspdgd+mqR+aayf+eALa r+++++++lyka+++++ +   +see+ + klf++++P+lk+++
  Cucsa.055340.1  46 LIHLLLTCANHVAVGSLDSANLALDQISHLASPDGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIP--MVSEEILVKKLFFDMFPFLKVAF 138
                     689*************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege+++HiiD+++++ +QW+aLlq L+ Rpegpp+lRiTgv++    ++e l ++++rL++ Ae+l++pf+fn  v++rledl+
  Cucsa.055340.1 139 VLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQILSVRPEGPPHLRITGVHP----RQEILDQMARRLTNEAEKLDIPFQFNS-VVSRLEDLD 228
                     ******************************************************....99*************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdevLk 229
                     +e+Lrvk+gEala+n+vlqlh++l                                                        + s++ + ++d++L+
  Cucsa.055340.1 229 MEKLRVKTGEALAINSVLQLHNFLgydnealqkpspsaaknvngvqysryphlnqttlrelldkdmvngcspspdsvsssALSQANATKIDSFLN 323
                     ****************************************************************************997744444444789**** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      ++sl Pkv+vv+eq+++hn+++ +er+leal++y+a+fd+le++++r+s er k+E++l+g+ei+n++acegaer+erhe+ e+W++r++ aGF
  Cucsa.055340.1 324 GLWSLTPKVMVVTEQDSNHNGTTVMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKHETWNQRFDVAGF 418
                     *********************************************************************************************** PP

            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++v+ls++ + qa++ll+ ++  gyr++ee+g+++++W+drpL+svSaWr
  Cucsa.055340.1 419 RQVSLSYYGMLQARSLLQGYGCGGYRMKEENGCVMICWQDRPLFSVSAWR 468
                     *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.34920448IPR005202Transcription factor GRAS
PfamPF035146.8E-14046468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFQDEGTSSI TSSPLQFFTM MSLSPKLGSP YPWLRELKSE ERGLYLIHLL LTCANHVAVG  60
SLDSANLALD QISHLASPDG DTMQRIAAYF AEALADRILK TWPGLYKAFN STKIPMVSEE  120
ILVKKLFFDM FPFLKVAFVL TNQAIVEAME GEKMIHIIDL NANETAQWLA LLQILSVRPE  180
GPPHLRITGV HPRQEILDQM ARRLTNEAEK LDIPFQFNSV VSRLEDLDME KLRVKTGEAL  240
AINSVLQLHN FLGYDNEALQ KPSPSAAKNV NGVQYSRYPH LNQTTLRELL DKDMVNGCSP  300
SPDSVSSSAL SQANATKIDS FLNGLWSLTP KVMVVTEQDS NHNGTTVMER LLEALHTYAA  360
IFDCLESNMS RTSLERLKLE KMLFGEEIKN IIACEGAERK ERHEKHETWN QRFDVAGFRQ  420
VSLSYYGMLQ ARSLLQGYGC GGYRMKEENG CVMICWQDRP LFSVSAWRCC K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-41294671377Protein SCARECROW
5b3h_D4e-41294671377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139120.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3BP340.0A0A1S3BP34_CUCME; scarecrow-like protein 3 isoform X1
STRINGXP_004139120.10.0(Cucumis sativus)
STRINGXP_004154646.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]