PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.054000.1 | ||||||||
Common Name | Csa_3G564320, LOC101222902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 263aa MW: 27878.2 Da PI: 8.529 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.6 | 5.4e-39 | 27 | 131 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eL +++d++ti+WLlqqa+p+i+++tgt++++as+ a++ s+s++ s + Cucsa.054000.1 27 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELDHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSaglhqkle 121 789******************************************************************99955555555543333334544444 PP TCP 89 .........k 89 + Cucsa.054000.1 122 elggggssrA 131 5555544440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-31 | 32 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.001 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGENKPAEIK DFQIAIAEKE EGKKQLAPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL 60 TRELDHKSDG ETIQWLLQQA EPSIIAATGT GTIPASALAA AAGSVSQQGA SLSAGLHQKL 120 EELGGGGSSR ANWGRPHLAA TPTALWPSSV TGFGFQSSTA AAAVAAQSAT NLPNETSNYF 180 HKLGFPPFDL TPTNMGPMSF TSILGANTQQ LPGLELGLSQ DGHIGVLNPQ ALNQIYQQMG 240 QPRVHQHHHQ QPPAKDDSQD SA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681857 | 0.0 | LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148022.1 | 0.0 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 6e-76 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0A0L891 | 0.0 | A0A0A0L891_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148022.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-71 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.054000.1 |
Entrez Gene | 101222902 |