PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.053600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 28132.4 Da PI: 5.9667 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+++++++G g+W++ ++ g+ R++k+c++rw +yl Cucsa.053600.1 14 KGPWTPEEDQTLINYINLYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l Cucsa.053600.1 67 RGNFTAEEEETIINLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.344 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.68E-32 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.371 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.32E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVRAPCCEKM GLKKGPWTPE EDQTLINYIN LYGHGNWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TAEEEETIIN LHQMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLRQNY 120 ATPQLRNYPV MNEEESIAQQ PFKYTNYGSM PSSALAFSPP HCSSESSSII TAENGESWTN 180 NLPEADENFW REVLGSDQMA TVGNQQGFEG ETSERQLGNL TNEQPTHETT DFWTIFFQEE 240 GIYLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKRLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681827 | 0.0 | LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151985.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1S3BI17 | 1e-162 | A0A1S3BI17_CUCME; myb-related protein Myb4-like | ||||
STRING | XP_004151985.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-77 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.053600.1 |