PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.052720.1 | ||||||||
Common Name | Csa_6G290790, LOC101215067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21715.5 Da PI: 6.0909 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.9 | 1.5e-42 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+ Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+a+la Cucsa.052720.1 37 PCAACKILRRRCAERCVLAPYFPPSEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQKQVNELQAQLA 131 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Cucsa.052720.1 132 KAQAE 136 *9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.209 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-42 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEGSDTITVT TVSSTPLSQS PSSSSSPAPP PPVILSPCAA CKILRRRCAE RCVLAPYFPP 60 SEPAKFAIAH RVFGASNIIK FLQELPESQR ADAVSSLVYE ASARVRDPVY GSAGAICQLQ 120 KQVNELQAQL AKAQAEVVNM QCQQANLVAF VCRELAQSHQ SFDEFNGSPQ SHNGLLQSIH 180 PPSYFDDSNN VNSLWEPLWT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 28 | 144 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 28 | 144 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681922 | 1e-168 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. | |||
GenBank | LN713265 | 1e-168 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149555.1 | 1e-145 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0A0KCM5 | 1e-144 | A0A0A0KCM5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149555.1 | 1e-145 | (Cucumis sativus) | ||||
STRING | XP_004167808.1 | 1e-145 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-63 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.052720.1 |
Entrez Gene | 101215067 |
Publications ? help Back to Top | |||
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