PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050840.2
Common NameCsa_1G560650, LOC101215976
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 157aa    MW: 17866.9 Da    PI: 8.2041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050840.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.6e-095680226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    + ++C++f+ tG+C+yGd+Ck+ H+
  Cucsa.050840.2 56 RPRICNRFLSTGFCQYGDSCKYFHP 80
                    6799******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004513.6E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576674.03E-14449No hitNo description
PfamPF062201.5E-9536IPR013085Zinc finger, U1-C type
SuperFamilySSF902291.57E-75282IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-45481IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-85480IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0045582IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-75680IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPF ARKRHLQSLS HQKAKALWFD SFKDFNQSFP HSFHFRPRIC  60
NRFLSTGFCQ YGDSCKYFHP NNNNDNTYNS SSYPMAGFPE NYQPPNVPVN RFVDGNSSST  120
GSLISDRLGT SWGNLPPSLM PPPDGGYPPL PFVDWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818064e-56LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132564e-56LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135569.11e-113PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-42C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0A0M1B01e-111A0A0A0M1B0_CUCSA; Uncharacterized protein
STRINGXP_004163363.11e-112(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-29C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]