PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.050160.8 | ||||||||
Common Name | Csa_7G428890, LOC101202980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 419aa MW: 46307.2 Da PI: 8.1125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.4e-13 | 354 | 398 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P K s a++Le+AveYIk Lq Cucsa.050160.8 354 SIAERMRRTRISERIKKLQELFPDM-----DKTSTADMLELAVEYIKGLQ 398 689*********************6.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.272 | 348 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-14 | 351 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-11 | 352 | 402 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.2E-13 | 353 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-12 | 354 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-10 | 354 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MSLLYSTNFK FSNDEMKKYP DFMDCDSTNN HHSQQEHNNS GGLMRYCSAP TSLFASLVDG 60 TEGFNSSNNG GGTREDYRFI RSSSPEVEVI LSRFMASCNG KFDSGSGERT VKEETGEPVQ 120 QQNGFCNQPS SMVNTRSVDA GGRAPVGNSY GVMNSSDFDN SMQSQLGARN CSNLFRQSSS 180 PAGFFSHLIA ENGNTTREVD KFGTCNRKDV DAAYPSTRIG SQMNLSGHSF GSNHMPPIAE 240 EENKSIGIVG SSRHRQKANS GDRLQTDDFL NSSWDNSAMR DTKRGRDNNG RAFATSIVLE 300 TQNADSGNNI RGLAHHLSLP ISFNKDPVEK FLRFQEPVPH QIRAKRGCAT HPRSIAERMR 360 RTRISERIKK LQELFPDMDK TSTADMLELA VEYIKGLQRQ VKTLTDTKAK CTCSCSSQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 0.0 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011659461.1 | 0.0 | PREDICTED: transcription factor bHLH130 isoform X2 | ||||
Refseq | XP_011659462.1 | 0.0 | PREDICTED: transcription factor bHLH130 isoform X3 | ||||
TrEMBL | A0A0A0K9U6 | 0.0 | A0A0A0K9U6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004167982.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 9e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.050160.8 |
Entrez Gene | 101202980 |
Publications ? help Back to Top | |||
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